Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01474 ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCTGTGAACTTGAAGCCGGATCGGAGCGCCTTTGATTTAGGCCCCGATGTGTCGGTTTCCTCTCCGGTGACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATTGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGGTACGATATTTCTTTTTGTGATCGTTCGAATGATTTTAATTTTAAGTTTTGTTTTATGGCCTGCTGTGAATTTTATGAACTTGTGGAGACTCTTGAGAAGAAATTGTGGAAAACACGGAGAACGCTTCAACGAAGAGCGGAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAGACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTTATCGGTAAAGGTGCATTCGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGGTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGGTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGATGAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATACTGACTCTAATGGATCTCATTGGACTATGCCAAAAGAACAAATTCAACAATGGAAGCGTAATCGCCGTGCGTTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCTAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCTGAGGAACCAAGAATCTCGGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAGTGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACCGTCACTGGAGAACTAGACACTCAGAACTTCGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCAGAAATGCCAACTGTTGGACCTTGGAGGAAGCTTTGTCACTTGGTGCCTGTTGACTCTACTGACTGTTTGCGAAGTGTAGGATACTTCCATAGCTTGTATATGCTAACCTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAATGTCAAATCACTTGAGAGTACAGGTACATTGAACAGTACAGATGTGCATTCAAACACATCATCAAAAACACCATCTCTAGTTTCCTTGTTGGGTCGGATAGAGTTGCAAGAAACAGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1767 41.88 MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRYDISFCDRSNDFNFKFCFMACCEFYELVETLEKKLWKTRRTLQRRAEEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQAKNEGQGHTDSNGSHWTMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKLCHLVPVDSTDCLRSVGYFHSLYMLTSKDTNFIGFTFKKSNVKSLESTGTLNSTDVHSNTSSKTPSLVSLLGRIELQETVIPEVEQKQEA 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22869166 22874149 - Lsi08G014740.1 Lsi08g01474 669400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01474 588 Pfam Protein kinase domain 146 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01474 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Lsi08g01474 588 SUPERFAMILY Protein kinase-like (PK-like) 123 495 IPR011009 -
Lsi08g01474 588 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 100 574 - -
Lsi08g01474 588 CDD STKc_NDR_like 144 536 - -
Lsi08g01474 588 Coils Coil 102 139 - -
Lsi08g01474 588 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 63 - -
Lsi08g01474 588 Gene3D Transferase(Phosphotransferase) domain 1 348 467 - -
Lsi08g01474 588 Gene3D Transferase(Phosphotransferase) domain 1 230 298 - -
Lsi08g01474 588 Gene3D Phosphorylase Kinase; domain 1 468 478 - -
Lsi08g01474 588 Gene3D Phosphorylase Kinase; domain 1 143 229 - -
Lsi08g01474 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 100 574 - -
Lsi08g01474 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 63 - -
Lsi08g01474 588 ProSiteProfiles AGC-kinase C-terminal domain profile. 450 545 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi08g01474 588 SMART pkinase_C_6 450 537 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi08g01474 588 SMART serkin_6 146 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01474 588 ProSiteProfiles Protein kinase domain profile. 146 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01474 588 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00299 Lsi-Chr6:3436514 Lsi08g01474 Lsi-Chr8:22869166 0 dispersed
Lsi08g01474 Lsi-Chr8:22869166 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi08g01474 Lsi-Chr8:22869166 Lsi04g01409 Lsi-Chr4:21848408 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83862 PF00069 Pkinase 1.50E-64 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01474 K08790 - csv:101222805 982.245