Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01479 | ATGAATTTCAAGGATTTTGGGAATGACCCCTCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCATTAGCGCGACAGTCATCGATCTACTCGCTGACCTTCGATGAGTTTCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTTCTGCTGTTGTTGGTAAAGAAGGGGCTGGTAGTGTTGGTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACGCTGCCTCGGACACTCAGCCATAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAATGCTAAAGAAGGGGCTACTATTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGAGAGATGACACTTGAAGAGTTTTTATTTAGAGCTGGAGTGGTGAGAGAGGATACTCAAGTGACTGCGAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGCGTTGGAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAACAATCACATTCCGATTCAATCGTCGAACTTATCGTTGAATGTCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGCCTACTATGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGTTGAATACAAATTTGATGCAAGGCTCTGCACTACAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCATTACCTATTGCAACAGAATCGCCGGGGAATCAACTATCATCTGATGGGATTGGAAAGAGTAATGGTGATACCTCGTCCGTGTCTCCTGTGCCTTATGCGCTTAATGGTGGAATGAGGGGGAGGAGAAGTAATGGGATTGTCGACAAAGTTGTCGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCACGGGCTCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAACGGATAAACAACAAGGAATCAAGAAGCGATGCTTAAGACGAACGCAGACTGGCCCATGGTGCTGTGTAGCATATGTCTCGGGGTGTCTTGCTTACAGGGGAAGTAGAGTGAGGAAGGCGCCGGAGATGGGGTTTCAGGACCAAACGGCGTCGTCCAGACCAGGCTTTAGAGCTCGCGATTCCAGCCCCGATTCTGTCATTTATGCTCTCGAATCGAGTTTCAGTCTCTTCTCTTCTGCTTCCGCTAGTGTGGAGCGCTGCTCTTTTGCATCGGAGGCCCACGACCGCGATTCCCTCATCTCTGAAATCTCACTTCATTTGGCAGGCAATGATGAAGGAAACCACGAGAGTTGCGGTGGTCCAGATCCAGATCCAAACAAACCTGCACTAAGCAACAAACACAGTCGTCTCTATACAAAGGGAGAAAAAGCGAAAGCAATTCAAAAAGATGACAGCAATGTCGATATAGAAGATGAGAATAGAACCGTCGATTCAGCGAGGAATTCCTTTTCTCTTGCCCTGAAAGAGTGTCAAGATCATAGATCCAGATCTGAAGCTCAATCCAGGAAGCTGGACAGAAGGAGGCCTGCCTCATTGGATCTAAATAACGCTACTACAGCTTCCTCACCTCGTTTGGCAACTGTCAAGAAGAACCCTATAGTATCAACACGTAAGACTGGAACATTTCCGAGCCCTGGGACGCCGAATTATCGGCACAATAGCTTTGGTATGCAAAAGGGGTGGAGCTCAGAGCGAGTGCCATTGCACAACAACGGCGGTCGGAAACAGACTAATAACCCTGCATTGCTGACTCTCAACAGCGGCAGAACATTGCCATCGAAGTGGGAAGATGCTGAAAGGTGGATCTTTAGTCCCATATCCGGTGATGGGGTTGTGAGGAACTCAGTTCCACTTCCTCAACGGCGACCGAAGTCGAAGAGTGGGCCACTTGGCCCTCCTGGTATTGCATACTATTCACTATATTCGCCGGCAGCTCCAGCCTATGACGGAGGGACTTTTGGGAATTTCATTACAGGGTCACCATTTTCAGCTGGAGTGATATCAACTAATGGCTTGGGGATTCATTCCAGTGGGCATGAAGGGGCCTTTCATGGACAAACAGAGCCCTCCATGGCACGCTCGCTTAGCGTTCATGGGTGCTCTGAAATGTTGGGTCAATTGTCATCAACAACCGACTTGCAAGAAGAATCAGGGGAAAATCTAACTGCGGTCAAGGATTCAGGGGCGGATGTTTCTCGTGTTGTTTCAAGAAGGGACATGGCTACACAAATGAGCCCGGAGAGTAGTGTGCATTCATCTCCCAAGACGAGGCCGTCAATCTCTGCCACCAGTTCATCTGCTATGCATATGTTTGAGCTGGGAGCTGTCACTTCTAAGTTGGAGATCAGGGACGTACAAGTTGATAATCAGGTTACTATGACAAGGTGGTCGAAGAAACATAAAGCTTCATTTCCTTGGAAAGACTCTCTTGACGACAAGAGGAAGAAAGATGCTGATGCGGTTTCTCGATGTTCAGATTTAGACATTCCTACAATAGGAAAAAGTATTTCAAAGGTTAAGCGTGAGGAAGCCAAAATAACTGCATGGGAGAATCTACAAAAAGCAAAAGCCGATGCAGCTATACGTAAACTAGAGATGAAGCTGGAAAAGAAGAGAGCGACGTCAATGGATAAGATCATGAATAAGCTGAAATCTGCTCAGAAGAGAGCCCAAGAAATGAGGAGCTCATACTCCGTTCATTACCAATTCCCTGATATGGCCATTCAACCAGGTGATTAG | 2973 | 47.29 | MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSSAVVGKEGAGSVGGSGGYLQRQGSLTLPRTLSHKKVDEVWKDIINEHANAKEGATIASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGVGIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRAHQPQPIFPKQPTMTYGSQLALPSDGQLASPGIRGGIMGIADQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPGNQLSSDGIGKSNGDTSSVSPVPYALNGGMRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVTDKQQGIKKRCLRRTQTGPWCCVAYVSGCLAYRGSRVRKAPEMGFQDQTASSRPGFRARDSSPDSVIYALESSFSLFSSASASVERCSFASEAHDRDSLISEISLHLAGNDEGNHESCGGPDPDPNKPALSNKHSRLYTKGEKAKAIQKDDSNVDIEDENRTVDSARNSFSLALKECQDHRSRSEAQSRKLDRRRPASLDLNNATTASSPRLATVKKNPIVSTRKTGTFPSPGTPNYRHNSFGMQKGWSSERVPLHNNGGRKQTNNPALLTLNSGRTLPSKWEDAERWIFSPISGDGVVRNSVPLPQRRPKSKSGPLGPPGIAYYSLYSPAAPAYDGGTFGNFITGSPFSAGVISTNGLGIHSSGHEGAFHGQTEPSMARSLSVHGCSEMLGQLSSTTDLQEESGENLTAVKDSGADVSRVVSRRDMATQMSPESSVHSSPKTRPSISATSSSAMHMFELGAVTSKLEIRDVQVDNQVTMTRWSKKHKASFPWKDSLDDKRKKDADAVSRCSDLDIPTIGKSISKVKREEAKITAWENLQKAKADAAIRKLEMKLEKKRATSMDKIMNKLKSAQKRAQEMRSSYSVHYQFPDMAIQPGD | 990 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 22939102 | 22949651 | + | Lsi08G014790.1 | Lsi08g01479 | 669405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 590 | 630 | - | - | |
| Lsi08g01479 | 990 | CDD | bZIP_plant_BZIP46 | 333 | 385 | - | - | |
| Lsi08g01479 | 990 | Coils | Coil | 954 | 974 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 501 | 551 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 527 | 551 | - | - | |
| Lsi08g01479 | 990 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 336 | 351 | IPR004827 | GO:0003700|GO:0006355 | |
| Lsi08g01479 | 990 | SUPERFAMILY | Leucine zipper domain | 333 | 381 | IPR046347 | GO:0003700|GO:0006355 | |
| Lsi08g01479 | 990 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 331 | 382 | IPR004827 | GO:0003700|GO:0006355 | |
| Lsi08g01479 | 990 | Gene3D | - | 331 | 387 | - | - | |
| Lsi08g01479 | 990 | Coils | Coil | 349 | 386 | - | - | |
| Lsi08g01479 | 990 | PANTHER | OS02G0116800 PROTEIN | 512 | 976 | - | - | |
| Lsi08g01479 | 990 | Pfam | Remorin, C-terminal region | 912 | 974 | IPR005516 | - | |
| Lsi08g01479 | 990 | Pfam | bZIP transcription factor | 333 | 385 | IPR004827 | GO:0003700|GO:0006355 | |
| Lsi08g01479 | 990 | Coils | Coil | 932 | 952 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 565 | 630 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Lsi08g01479 | 990 | SMART | brlzneu | 329 | 393 | IPR004827 | GO:0003700|GO:0006355 | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 816 | 843 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 565 | 588 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 788 | 843 | - | - | |
| Lsi08g01479 | 990 | MobiDBLite | consensus disorder prediction | 287 | 307 | - | - | |
| Lsi08g01479 | 990 | PANTHER | REMORIN FAMILY PROTEIN | 512 | 976 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01558 | Lsi08g01479 | CCT | |
| Lsi04g01558 | Lsi08g01479 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01900 | Lsi-Chr3:30358907 | Lsi08g01479 | Lsi-Chr8:22939102 | 6.44E-57 | dispersed | |
| Lsi08g01479 | Lsi-Chr8:22939102 | Lsi10g01163 | Lsi-Chr10:15906316 | 3.69E-15 | dispersed | |
| Lsi11g00027 | Lsi-Chr11:290992 | Lsi08g01479 | Lsi-Chr8:22939102 | 1.73E-12 | transposed | |
| Lsi01g00975 | Lsi-Chr1:7971455 | Lsi08g01479 | Lsi-Chr8:22939102 | 1.49E-78 | wgd | |
| Lsi03g00501 | Lsi-Chr3:5759650 | Lsi08g01479 | Lsi-Chr8:22939102 | 3.89E-93 | wgd | |
| Lsi04g01558 | Lsi-Chr4:23131941 | Lsi08g01479 | Lsi-Chr8:22939102 | 2.89E-164 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25823 | PF03763 | Remorin_C | 1.80E-20 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01479 | - | - | csv:101202771 | 1019.99 |