Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01480 ATGGATGTTGAGCATGTAATTAAGTCGGGAGATGAGATGGATATTGTGAGTGTGATTCAGAATATGGGAAAATTTGCAGAGAATTTAGAATATAGTGAAGTGGCAGCTTCGGCTTTTGCTTTTGGTTTTGGTAGTTCCAATATTCCCACTCCCACTTCACAACCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCCTTCCCATCAATAACGCCACTCCACCACCGTCTTTTCCACCCTATTCCGCCGCTGCCCGGTGGAGATCCCATCTTCCCGCCACTCGAAATTCCCGCATGATGAAGGGGGAAGAATCAGAATCAATGGGAGCAATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGCCGGAATGTTAAAATTTCAAAAGATCCACAGAGCGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGTGAGAGAATTCGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAAGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTCCATTCACTCCAAATTGCCGCCGCCACCACCAACCGCCCCGCCGCCTCCGCCTATCCTTTCCCCACCACGATGTTCTCCGGTGGGACTACTAATTTTAAACATCACCACGTGGAGGATGCTTGA 708 47.6 MDVEHVIKSGDEMDIVSVIQNMGKFAENLEYSEVAASAFAFGFGSSNIPTPTSQPIFPSFNNLPPSTLPINNATPPPSFPPYSAAARWRSHLPATRNSRMMKGEESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAATTNRPAASAYPFPTTMFSGGTTNFKHHHVEDA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22953246 22954131 - Lsi08G014800.1 Lsi08g01480 669406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01480 235 Pfam Helix-loop-helix DNA-binding domain 152 191 IPR011598 GO:0046983
Lsi08g01480 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Lsi08g01480 235 SMART finulus 148 197 IPR011598 GO:0046983
Lsi08g01480 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 228 IPR045843 GO:0003700|GO:0006355
Lsi08g01480 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 204 IPR036638 GO:0046983
Lsi08g01480 235 Gene3D - 138 201 IPR036638 GO:0046983
Lsi08g01480 235 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 47 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01550 Lsi08g01480 CCT
Lsi04g01550 Lsi08g01480 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01480 Lsi-Chr8:22953246 Lsi10g00560 Lsi-Chr10:8215560 2.06E-50 dispersed
Lsi01g01144 Lsi-Chr1:9621284 Lsi08g01480 Lsi-Chr8:22953246 1.16E-39 transposed
Lsi04g01550 Lsi-Chr4:23061836 Lsi08g01480 Lsi-Chr8:22953246 1.17E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25824 PF00010 HLH 1.50E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01480 - - csv:105434749 274.248