Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01480 | ATGGATGTTGAGCATGTAATTAAGTCGGGAGATGAGATGGATATTGTGAGTGTGATTCAGAATATGGGAAAATTTGCAGAGAATTTAGAATATAGTGAAGTGGCAGCTTCGGCTTTTGCTTTTGGTTTTGGTAGTTCCAATATTCCCACTCCCACTTCACAACCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCCTTCCCATCAATAACGCCACTCCACCACCGTCTTTTCCACCCTATTCCGCCGCTGCCCGGTGGAGATCCCATCTTCCCGCCACTCGAAATTCCCGCATGATGAAGGGGGAAGAATCAGAATCAATGGGAGCAATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGCCGGAATGTTAAAATTTCAAAAGATCCACAGAGCGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGTGAGAGAATTCGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAAGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTCCATTCACTCCAAATTGCCGCCGCCACCACCAACCGCCCCGCCGCCTCCGCCTATCCTTTCCCCACCACGATGTTCTCCGGTGGGACTACTAATTTTAAACATCACCACGTGGAGGATGCTTGA | 708 | 47.6 | MDVEHVIKSGDEMDIVSVIQNMGKFAENLEYSEVAASAFAFGFGSSNIPTPTSQPIFPSFNNLPPSTLPINNATPPPSFPPYSAAARWRSHLPATRNSRMMKGEESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAATTNRPAASAYPFPTTMFSGGTTNFKHHHVEDA | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22953246 | 22954131 | - | Lsi08G014800.1 | Lsi08g01480 | 669406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01480 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 152 | 191 | IPR011598 | GO:0046983 | |
Lsi08g01480 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 142 | 191 | IPR011598 | GO:0046983 | |
Lsi08g01480 | 235 | SMART | finulus | 148 | 197 | IPR011598 | GO:0046983 | |
Lsi08g01480 | 235 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 47 | 228 | IPR045843 | GO:0003700|GO:0006355 | |
Lsi08g01480 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 146 | 204 | IPR036638 | GO:0046983 | |
Lsi08g01480 | 235 | Gene3D | - | 138 | 201 | IPR036638 | GO:0046983 | |
Lsi08g01480 | 235 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 47 | 228 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01550 | Lsi08g01480 | CCT | |
Lsi04g01550 | Lsi08g01480 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01480 | Lsi-Chr8:22953246 | Lsi10g00560 | Lsi-Chr10:8215560 | 2.06E-50 | dispersed | |
Lsi01g01144 | Lsi-Chr1:9621284 | Lsi08g01480 | Lsi-Chr8:22953246 | 1.16E-39 | transposed | |
Lsi04g01550 | Lsi-Chr4:23061836 | Lsi08g01480 | Lsi-Chr8:22953246 | 1.17E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25824 | PF00010 | HLH | 1.50E-06 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01480 | - | - | csv:105434749 | 274.248 |