Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01484 ATGAGTTTCTCATCTGATCAGGACATTGGGAATTATTGCAGGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCTACCATCTATCAAAAAGTTGCTGGTCAGCTGTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAACTATACAAATGCTGCTTTTCAATATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTCGTTGCTGCCCCTGCAGAGAAAGGAAACTTTATGATTGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCCGCTGCCCCAATTGAGCGTGTCAAACTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTTAAGCGCACAATCCAAGAGGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCAAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGACTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCAGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCTCGTACCCGATTGGCAAACGATGCCAAAGCTGCCAAGAAAGGTGGAGAGAGGCAATTCAATGGACTGGTGGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGTCTATACCGTGGATTTAACATTTCTTGTGTTGGTATTATCGTGTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACCGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCCTGGGTTGGCTCATCACCAATGGTGCTGGTCTTGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCCCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATCGTCTTGGGGAAGAAATACGGATCTGGTGGTGCTTAA 1227 46.05 MSFSSDQDIGNYCREEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNYTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23002042 23003926 + Lsi08G014840.1 Lsi08g01484 669410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01484 408 Pfam Mitochondrial carrier protein 107 203 IPR018108 -
Lsi08g01484 408 Pfam Mitochondrial carrier protein 210 306 IPR018108 -
Lsi08g01484 408 Pfam Mitochondrial carrier protein 311 396 IPR018108 -
Lsi08g01484 408 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 303 IPR018108 -
Lsi08g01484 408 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 20 408 - -
Lsi08g01484 408 SUPERFAMILY Mitochondrial carrier 106 393 IPR023395 -
Lsi08g01484 408 Gene3D Mitochondrial carrier domain 109 404 IPR023395 -
Lsi08g01484 408 ProSiteProfiles Solute carrier (Solcar) repeat profile. 106 199 IPR018108 -
Lsi08g01484 408 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 20 408 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 111 124 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 320 342 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 124 138 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 174 194 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Mitochondrial carrier protein signature 276 294 IPR002067 GO:0055085
Lsi08g01484 408 PRINTS Adenine nucleotide translocator signature 108 120 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 PRINTS Adenine nucleotide translocator signature 152 173 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 PRINTS Adenine nucleotide translocator signature 211 224 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 PRINTS Adenine nucleotide translocator signature 185 197 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 PRINTS Adenine nucleotide translocator signature 316 332 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01484 408 ProSiteProfiles Solute carrier (Solcar) repeat profile. 311 397 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01484 Lsi-Chr8:23002042 Lsi11g01699 Lsi-Chr11:25167552 0 dispersed
Lsi09g01050 Lsi-Chr9:15829657 Lsi08g01484 Lsi-Chr8:23002042 2.12E-22 dispersed
Lsi08g01484 Lsi-Chr8:23002042 Lsi08g01485 Lsi-Chr8:23007388 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01484 K05863 - csv:101203733 740.339