Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01485 ATGTTGCATCGCGAAACCCTCTCTCCGCCTGAAATTTTCGCTTTCTTCCAAAGCGACATTGTAGCCGCGGCAGACTCCTCCCAAATTCCCTCGCGGCCATCAGTTTCTCACAAGGTCTCATATTCCTGTAATAGCTTTCTGCCCTATCAAATCCATAGTCTTGCCCCATTACTGTCGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCTACCATCTATCAAAAAGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAACTATACAAATGCTGCTTTTCAATATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTCGTTGCTGCCCCTGCAGAGAAAGGAAACTTTATGATTGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCCGCTGCCCCAATTGAGCGTGTCAAACTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTTAAGCGCACAATCCAAGAGGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCAAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGACTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCAGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCTCGTACCCGATTGGCAAACGATGCCAAAGCTGCCAAGAAAGGTGGAGAGAGGCAATTCAATGGACTGGTGGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGTCTATACCGTGGATTTAACATTTCTTGTGTTGGTATTATCGTGTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACCGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCCTGGGTTGGCTCATCACCAATGGTGCTGGTCTTGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCCCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATCGTCTTGGGGAAGAAATACGGATCTGGTGGCGCTTAA 1362 46.7 MLHRETLSPPEIFAFFQSDIVAAADSSQIPSRPSVSHKVSYSCNSFLPYQIHSLAPLLSEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNYTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGA 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23007388 23010389 + Lsi08G014850.1 Lsi08g01485 669411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01485 453 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 65 453 - -
Lsi08g01485 453 ProSiteProfiles Solute carrier (Solcar) repeat profile. 356 442 IPR018108 -
Lsi08g01485 453 ProSiteProfiles Solute carrier (Solcar) repeat profile. 151 244 IPR018108 -
Lsi08g01485 453 PRINTS Adenine nucleotide translocator signature 230 242 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 PRINTS Adenine nucleotide translocator signature 197 218 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 PRINTS Adenine nucleotide translocator signature 361 377 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 PRINTS Adenine nucleotide translocator signature 256 269 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 PRINTS Adenine nucleotide translocator signature 153 165 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 Pfam Mitochondrial carrier protein 255 351 IPR018108 -
Lsi08g01485 453 Pfam Mitochondrial carrier protein 152 248 IPR018108 -
Lsi08g01485 453 Pfam Mitochondrial carrier protein 356 441 IPR018108 -
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 156 169 IPR002067 GO:0055085
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 271 289 IPR002067 GO:0055085
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 365 387 IPR002067 GO:0055085
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 321 339 IPR002067 GO:0055085
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 219 239 IPR002067 GO:0055085
Lsi08g01485 453 PRINTS Mitochondrial carrier protein signature 169 183 IPR002067 GO:0055085
Lsi08g01485 453 Gene3D Mitochondrial carrier domain 154 449 IPR023395 -
Lsi08g01485 453 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 348 IPR018108 -
Lsi08g01485 453 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 65 453 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi08g01485 453 SUPERFAMILY Mitochondrial carrier 151 438 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00140 Lsi-Chr2:1159217 Lsi08g01485 Lsi-Chr8:23007388 4.66E-132 dispersed
Lsi08g01485 Lsi-Chr8:23007388 Lsi11g01699 Lsi-Chr11:25167552 0 dispersed
Lsi08g01484 Lsi-Chr8:23002042 Lsi08g01485 Lsi-Chr8:23007388 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01485 K05863 - csv:101203733 740.339