Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01486 ATGGCGGATCTCTACGGAACTTCCCCTTCTTCGGATGTTGCGGGTTTGCCCCATGACCCAGAAGATTTCTCTTCCTACATGAATCACCATCTTCAAACCACCACTTCTGCTTCTTCCCCTTCTCGCGTCTCCTTCAAGAACAAGTTCATGCCCTTGTTGCATTCTCAACCTCCTTGGCACTCTGTTGCCGGAGTGTCCTGCATGCTCGATTTTCCCGAGGATCGGCTTCAGTCCAGTCGAGTTTTGAACCACGCTTTGTCGGATTGTAGTGTTAGGGATGTGAGATTTGCTGATGCTTCGTATTTGGCTGTCAACTCCACTTGCGGCGGAGTGAAATTGTCGGATCCCGGAGATTTCGTCAAAGAAAGTTCGGACAACGCGTTTTCTTCCTCCGGCGCTGTCGATTCCGATTCGAATGCGCCGTTGAAGAGAAGGGGACTTTCGTCTGAAAATGATCTTGGCGATTTCAGTTGCGATAGCGAGGGTGGGGATGTGCCGGAAGTTCCATCCAGTACTGATCTGCCTCGAAATTCGTCGAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGACGAAGAAGGAGGATCAATGAGAAAATGAAAGCCCTTCAGAACTTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGACGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTCCAGATGTTATCAATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCAGGAATGCTGCAGCCAATTCAACTACCTCAGATGGGGTTGGACTTTGACGTAGGAAATGCATTTCTAACATCCAGAAGAGGAATAGACACATCGTCTACTAGGAACGAAGGATGTCCCTTGCAATCTACATTCAATCTTTCCAACAAATGTAACCTTTCAGATCAGTCAATTGCCATCCCTTCTGTACCAAACACCACAACTTCGGAAACGGCATTCGGTTTTGAACCCGCGATTCAGGCATACAATGGGGAGTTCGACCTTTCCTCTGATTTCAAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTTGTTTTGGGTATTTGCGTTGGTGCCGCCATTGTTATCGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTTCCAATAAATCTAAACCTTCTCTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAACCCAACTCTTTCTGACCCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCGACGCTTCTTCAGACGGAAGAAGAGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGGAAAGACCACCGGATTTCATACCCGGAGAGAGGTGGCGGTTCGTCCCACGGTAGCGGAGAGGCTCGGTCTGGTGATCAGGCGCCAATGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTAATAGTTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGCATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCTATAAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTGGAAGTGGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAATACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTGACATGGGACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGCTAACATACCTCCACGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGAAGTGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTCTTGGCTCAGAGAGGAGTTATGTAACGACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGTATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGTCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTGGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGCGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAGCCGCCTCGGGAACCTCACACTTTAAGGTGA 2571 46.95 MADLYGTSPSSDVAGLPHDPEDFSSYMNHHLQTTTSASSPSRVSFKNKFMPLLHSQPPWHSVAGVSCMLDFPEDRLQSSRVLNHALSDCSVRDVRFADASYLAVNSTCGGVKLSDPGDFVKESSDNAFSSSGAVDSDSNAPLKRRGLSSENDLGDFSCDSEGGDVPEVPSSTDLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQLPQMGLDFDVGNAFLTSRRGIDTSSTRNEGCPLQSTFNLSNKCNLSDQSIAIPSVPNTTTSETAFGFEPAIQAYNGEFDLSSDFKLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTLSDPKVQLASNPEPLPEAEPLATLLQTEEESPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMAVPEVSHLGWGHWYTLRELEYSTNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKKWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQPPREPHTLR 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23012388 23022464 - Lsi08G014860.1 Lsi08g01486 669412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01486 856 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 243 IPR036638 GO:0046983
Lsi08g01486 856 CDD STKc_IRAK 522 788 - -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 817 856 - -
Lsi08g01486 856 Gene3D - 178 242 IPR036638 GO:0046983
Lsi08g01486 856 Gene3D Phosphorylase Kinase; domain 1 491 591 - -
Lsi08g01486 856 CDD bHLH_AtPIF_like 183 245 - -
Lsi08g01486 856 SUPERFAMILY Protein kinase-like (PK-like) 497 788 IPR011009 -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 179 196 - -
Lsi08g01486 856 SMART finulus 189 238 IPR011598 GO:0046983
Lsi08g01486 856 Gene3D Transferase(Phosphotransferase) domain 1 592 798 - -
Lsi08g01486 856 ProSiteProfiles Protein kinase domain profile. 516 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01486 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Lsi08g01486 856 Coils Coil 189 209 - -
Lsi08g01486 856 Pfam Helix-loop-helix DNA-binding domain 187 233 IPR011598 GO:0046983
Lsi08g01486 856 PANTHER OS01G0323000 PROTEIN 345 831 - -
Lsi08g01486 856 PANTHER RECEPTOR-LIKE KINASE PLANT 345 831 - -
Lsi08g01486 856 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Lsi08g01486 856 Pfam Protein kinase domain 517 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01486 856 MobiDBLite consensus disorder prediction 124 145 - -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 462 489 - -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 124 198 - -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 822 836 - -
Lsi08g01486 856 Coils Coil 222 242 - -
Lsi08g01486 856 MobiDBLite consensus disorder prediction 838 856 - -
Lsi08g01486 856 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Lsi08g01486 856 SMART serkin_6 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01195 Lsi-Chr5:19815987 Lsi08g01486 Lsi-Chr8:23012388 3.29E-82 dispersed
Lsi05g02060 Lsi-Chr5:27511818 Lsi08g01486 Lsi-Chr8:23012388 0 dispersed
Lsi08g01486 Lsi-Chr8:23012388 Lsi10g01538 Lsi-Chr10:19777590 0 dispersed
Lsi11g00667 Lsi-Chr11:7031505 Lsi08g01486 Lsi-Chr8:23012388 2.95E-24 dispersed
Lsi05g01088 Lsi-Chr5:18640473 Lsi08g01486 Lsi-Chr8:23012388 2.10E-14 transposed
Lsi06g01437 Lsi-Chr6:24918075 Lsi08g01486 Lsi-Chr8:23012388 4.34E-07 transposed
Lsi09g01634 Lsi-Chr9:24661922 Lsi08g01486 Lsi-Chr8:23012388 4.08E-06 transposed
Lsi11g01100 Lsi-Chr11:19137663 Lsi08g01486 Lsi-Chr8:23012388 2.08E-175 transposed
Lsi01g00968 Lsi-Chr1:7903717 Lsi08g01486 Lsi-Chr8:23012388 1.34E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25826 PF00069 Pkinase 8.00E-47 CL0016 Lsi TF
83863 PF00069 Pkinase 8.00E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01486 - - pper:18793124 1009.59