Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01487 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAATTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCCACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCAGAATATTTATTACCTACTTCTGATATAAATACCGGATATATAAGCTCTGTGAGCCATGAACAACGAAGTTTGAGCAGATGGAACTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGAGGTTCTGCCTGATGAGCAGAAAGCTGAAATTGGATGGTCTTCACTGACTCGTGATGCAGATGGTCTTGTTACCGAAAACCGACTCTGTGAGCCATCAAATAATCCGTCACTGGGTCATGTGAACTTGAGCCCACTGATTATACAAAATTCTAATTCTAATTCTAATGCTATTCCTCATAATCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAAGCGACAATAGCAGAGTTAATGAAGGTACTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGAGGATTTTATGTTCTAGTGCATCTGATCCTCTTATACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTCCAAATGACGGTAGAGCAGGCTCTTCCTTGGATGGTCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGTGGAAGCAGTAACTACTCACAGCATATTGAAAGCGGTTCTGAGCCCCATCTTCCAGTGTTCCCTGGTCGCTACAACACAGGCAGTAGGTTAAGCATACCTCCTCCACCGGCACGAATGAATCAGGCCCCTGTACGAGGTGCAGGTGAACTGACTTCCAACAGCTTCTCTGAGTCAATTGTTGCAGAAAGCTCGGACAGTTCTCAGAGAAACTATCGTATAAGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGGCAGGAACTGCTGTTAGGCATCCTGGGCCGCCATCTTCCCAGCTGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATGTGTCAGCTCAAGGTCAGCCAATTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCAACATGGGAAGAAATGTGTCCGAACATCCTATGTTTGTCCCAGCAAATGAGCTGAGGAATTTGGTTCGAAATCCATCAAATAGAGGTTTAGCATCTTCGAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCCGGTGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAATTCTCCTACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTGCTTCTGCTACAAATGAGTCTGGAGGAAGGACAAATAATTATTCACAGCGATCAGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGGCAGCATTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCTTATTCATTACGAAGTTTGGCTACTTCTGGTGAAGGAAGTGACAATAATAGACTTGTATCTGAGCACATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAACCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATTGGGAACGTCAACACGGGACTAAGTGAAGAGACGATAGTTGCTCAACTGAAACAAAAGAAGCGTGTGAATGCAGTTGACTCACAGGTGGAGGAAGAACCGTGTTGTGTTTGTCAGTATCAACTATCGACTAACAATCCACCTGATTTCCAGGAGGAATACGTCGACGGAGAAGACATCGGAACGCTGGAATGTGGGCATGACTTCCACACAACTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGTCCGATATGCAAAACAACTGGTTTAGCAAGACAAGAATGA 2178 44.63 MQGQRSSVGSLSETINFEHGSSSNNPGNPPVYWNNMWNPAENRIPEYLLPTSDINTGYISSVSHEQRSLSRWNLGEPSSCDMQTEVLPDEQKAEIGWSSLTRDADGLVTENRLCEPSNNPSLGHVNLSPLIIQNSNSNSNAIPHNLNLNASFASHGSDNSRVNEGTNVYKSSGSEEGRILCSSASDPLILPSGNSGLPVVPNDGRAGSSLDGRRAPCKRKSIEGNVAQSSLSGSSNYSQHIESGSEPHLPVFPGRYNTGSRLSIPPPPARMNQAPVRGAGELTSNSFSESIVAESSDSSQRNYRIRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAEHVLDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSNRGLASSNLSIPGNVASTSRVGSSSGVHPSSGPWIPPENSPTQFPRRLTEYVRRQLFASATNESGGRTNNYSQRSGSTSAQDMVLSSGSGRRGQHLLQPRSALWMERRGDGGLGLPYSLRSLATSGEGSDNNRLVSEHIRNVLGLVRRGETLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVAQLKQKKRVNAVDSQVEEEPCCVCQYQLSTNNPPDFQEEYVDGEDIGTLECGHDFHTTCIKQWLMQKNLCPICKTTGLARQE 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23031183 23037299 - Lsi08G014870.1 Lsi08g01487 669413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01487 725 MobiDBLite consensus disorder prediction 373 418 - -
Lsi08g01487 725 SMART ring_2 664 716 IPR001841 -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 492 527 - -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 437 463 - -
Lsi08g01487 725 SUPERFAMILY RING/U-box 657 719 - -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 375 397 - -
Lsi08g01487 725 Pfam RING-H2 zinc finger domain 663 717 IPR024766 GO:0008270
Lsi08g01487 725 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 722 - -
Lsi08g01487 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 720 IPR013083 -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 437 476 - -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 278 318 - -
Lsi08g01487 725 CDD RING-H2_TTC3 663 717 - -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 191 332 - -
Lsi08g01487 725 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 722 IPR045191 GO:0061630
Lsi08g01487 725 MobiDBLite consensus disorder prediction 223 243 - -
Lsi08g01487 725 MobiDBLite consensus disorder prediction 1 29 - -
Lsi08g01487 725 ProSiteProfiles Zinc finger RING-type profile. 664 717 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01487 - - - csv:101203243 1307.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00212 Lsi-Chr2:1751250 Lsi08g01487 Lsi-Chr8:23031183 7.29E-27 dispersed
Lsi04g02037 Lsi-Chr4:27484335 Lsi08g01487 Lsi-Chr8:23031183 2.33E-29 dispersed
Lsi04g02195 Lsi-Chr4:28987328 Lsi08g01487 Lsi-Chr8:23031183 2.80E-11 dispersed
Lsi08g00451 Lsi-Chr8:12149449 Lsi08g01487 Lsi-Chr8:23031183 6.64E-14 dispersed
Lsi08g01128 Lsi-Chr8:19925184 Lsi08g01487 Lsi-Chr8:23031183 3.25E-10 dispersed
Lsi08g01487 Lsi-Chr8:23031183 Lsi03g01645 Lsi-Chr3:27631109 6.25E-08 dispersed
Lsi08g01487 Lsi-Chr8:23031183 Lsi07g00308 Lsi-Chr7:3298977 8.41E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55