Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01489 ATGAAGAAAATGTGTTGGTTTGTGCAGACAGGAGTAGAAACACATCCAGGAGGGACACGTAGAGGAATGAGGACTCCTAATGCCCAACAAATTAAACACATAACTGCCCAGCTTGGCAACTACGGGAAGATCGAAGGAAAGAATGTATTTTATTGGTTTCGGAATCATAAAGCCCGTGAGAGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATCCCCACTTTCCACACGGGAGAAGAAGATAATCCGTACAAGAGGAAGTGCTTGTACTGGGGTTTTGAGTGTTTAGTAGAAGATCATAACGAGGTGTTGGGTTTGATCCAATTCTTCACCATGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACAACAACCCACCTCCGATAACACCACCACCACCACCACCACGCTCACCTCTTTTGACCTCAAAACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTCGGTTCCTCCCACGATCATAACAAAGACTCCTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTAGAAACACATCCAGGAGGGACACGGTGGAATCCAACCCAAGAACAAATAGGAATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAAATTGAACACATAACTGCCCAGCTTGGCAACTACGGGAAGATCGAAGGAAAGAATAATCATAAAGCCCGTGAGAGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATCCCCACTTTCCACACGGGAGAAGAAGATAGTCCGTACAAGAGGAAGTGCTTGTACTGGGGTTTTGAGTGTTTAGTAGAAGATCATAACGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCCTTGCACCCAGAACGCAGATGA 1041 46.59 MKKMCWFVQTGVETHPGGTRRGMRTPNAQQIKHITAQLGNYGKIEGKNVFYWFRNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTGEEDNPYKRKCLYWGFECLVEDHNEVLGLIQFFTMVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQQQPTSDNTTTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTGEEDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23051021 23052789 - Lsi08G014890.1 Lsi08g01489 669415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01489 346 SUPERFAMILY Homeodomain-like 24 69 IPR009057 -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 197 224 - -
Lsi08g01489 346 PANTHER WUSCHEL-RELATED HOMEOBOX 4 20 114 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Lsi08g01489 346 PANTHER WUSCHEL-RELATED HOMEOBOX 4 125 346 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Lsi08g01489 346 MobiDBLite consensus disorder prediction 59 89 - -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 257 302 - -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 186 224 - -
Lsi08g01489 346 Pfam Homeodomain 218 262 IPR001356 GO:0003677
Lsi08g01489 346 Pfam Homeodomain 23 62 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01489 Lsi-Chr8:23051021 Lsi10g01325 Lsi-Chr10:17468044 1.11E-16 dispersed
Lsi08g01489 Lsi-Chr8:23051021 Lsi06g01287 Lsi-Chr6:23429509 1.81E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25827 PF00046 Homeodomain 1.20E-07 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01489 - - csv:101204222 375.17