Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01489 ATGAAGAAAATGTGTTGGTTTGTGCAGACAGGAGTAGAAACACATCCAGGAGGGACACGTAGAGGAATGAGGACTCCTAATGCCCAACAAATTAAACACATAACTGCCCAGCTTGGCAACTACGGGAAGATCGAAGGAAAGAATGTATTTTATTGGTTTCGGAATCATAAAGCCCGTGAGAGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATCCCCACTTTCCACACGGGAGAAGAAGATAATCCGTACAAGAGGAAGTGCTTGTACTGGGGTTTTGAGTGTTTAGTAGAAGATCATAACGAGGTGTTGGGTTTGATCCAATTCTTCACCATGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACAACAACCCACCTCCGATAACACCACCACCACCACCACCACGCTCACCTCTTTTGACCTCAAAACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTCGGTTCCTCCCACGATCATAACAAAGACTCCTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTAGAAACACATCCAGGAGGGACACGGTGGAATCCAACCCAAGAACAAATAGGAATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAAATTGAACACATAACTGCCCAGCTTGGCAACTACGGGAAGATCGAAGGAAAGAATAATCATAAAGCCCGTGAGAGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATCCCCACTTTCCACACGGGAGAAGAAGATAGTCCGTACAAGAGGAAGTGCTTGTACTGGGGTTTTGAGTGTTTAGTAGAAGATCATAACGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCCTTGCACCCAGAACGCAGATGA 1041 46.59 MKKMCWFVQTGVETHPGGTRRGMRTPNAQQIKHITAQLGNYGKIEGKNVFYWFRNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTGEEDNPYKRKCLYWGFECLVEDHNEVLGLIQFFTMVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQQQPTSDNTTTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTGEEDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23051021 23052789 - Lsi08G014890.1 Lsi08g01489 669415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01489 346 SUPERFAMILY Homeodomain-like 24 69 IPR009057 -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 197 224 - -
Lsi08g01489 346 PANTHER WUSCHEL-RELATED HOMEOBOX 4 20 114 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Lsi08g01489 346 PANTHER WUSCHEL-RELATED HOMEOBOX 4 125 346 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Lsi08g01489 346 MobiDBLite consensus disorder prediction 59 89 - -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 257 302 - -
Lsi08g01489 346 MobiDBLite consensus disorder prediction 186 224 - -
Lsi08g01489 346 Pfam Homeodomain 218 262 IPR001356 GO:0003677
Lsi08g01489 346 Pfam Homeodomain 23 62 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01489 - - - csv:101204222 375.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01489 Lsi-Chr8:23051021 Lsi10g01325 Lsi-Chr10:17468044 1.11E-16 dispersed
Lsi08g01489 Lsi-Chr8:23051021 Lsi06g01287 Lsi-Chr6:23429509 1.81E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25827 PF00046 Homeodomain 1.20E-07 CL0123 Lsi TF