Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01499 ATGATATTTGGCACTTCCCTCTCAGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGTCAGAGTAATATGGCTGGTCGAGGTGGGGTTGAGAACAATCTATTGGGAAAGCTCGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGACCCATCCATCCTACGATTGAACCCTGCTCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGTCCGGGAATGTCATTTGCTCACCAACTGCTAGCTAAAGCAGGCCCAAATGCAGGTGTTGTGGGCTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAATTTCATTGAACGAATCAAAGCATCAGATAAAGATGGTGGAGTTGTGCGTGCTCTTTTCTGGTTTCAAGGTGAGAGTGATGCAGCTATGAGTGACACTGCCAGTAGATACAAAGACAACCTAAAGAAATTTTTTACCGACATTCGCAATGATATAAAACCTAGATTTTTACCCATCATTCTTGTTAAAATAGCCCTCTATGACTTTATGATGAAGCATGATACCCATGATCTGCCAGCAGTGAGGGCGGCAGAAGATGCAGTGAGTAAGGAGTTACCAAACGTGGTGACCATTGATGCCTTAAAATTACCTATAAACTTTGACACACACGAAGGCTTTAACCTAGATCATGGTCATTTTAATACCACAACGGAAATTACTTTGGGTAAATGGTTGGCTGATACCTACCTCTCCCACTATGGTCATTTACTCTAA 831 43.2 MIFGTSLSGATSPKNIFILAGQSNMAGRGGVENNLLGKLEWDGLIPPECQSDPSILRLNPARQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKAGPNAGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMSDTASRYKDNLKKFFTDIRNDIKPRFLPIILVKIALYDFMMKHDTHDLPAVRAAEDAVSKELPNVVTIDALKLPINFDTHEGFNLDHGHFNTTTEITLGKWLADTYLSHYGHLL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23136585 23137415 + Lsi08G014990.1 Lsi08g01499 669425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01499 276 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 14 269 IPR005181 -
Lsi08g01499 276 PANTHER BNACNNG62850D PROTEIN 11 272 - -
Lsi08g01499 276 SUPERFAMILY SGNH hydrolase 15 273 - -
Lsi08g01499 276 Gene3D SGNH hydrolase 12 273 IPR036514 -
Lsi08g01499 276 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 11 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01499 - - - csv:116402003 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00983 Lsi-Chr2:9892697 Lsi08g01499 Lsi-Chr8:23136585 0 dispersed
Lsi02g00984 Lsi-Chr2:9921354 Lsi08g01499 Lsi-Chr8:23136585 0 dispersed
Lsi05g01101 Lsi-Chr5:18776483 Lsi08g01499 Lsi-Chr8:23136585 0 dispersed
Lsi05g01102 Lsi-Chr5:18781426 Lsi08g01499 Lsi-Chr8:23136585 0 dispersed
Lsi08g00546 Lsi-Chr8:13595065 Lsi08g01499 Lsi-Chr8:23136585 6.32E-84 dispersed
Lsi08g01497 Lsi-Chr8:23127816 Lsi08g01499 Lsi-Chr8:23136585 7.01E-164 proximal
Lsi08g01498 Lsi-Chr8:23132432 Lsi08g01499 Lsi-Chr8:23136585 4.72E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214