Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01505 | ATGGCCGCGGCAGAGAACTGTTCTCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAACTTTCCAACATTCCGAATGTTAATGGGTCAGTGGCACCACAGAAGAGGAAGGCTAAGTCCCAGATGAAAAAATGCAAGCCCAAGAAGAGATCGAAGATTGGTGTTGCTCCAACGATCAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAATTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTCTTGGTTGATTGGATGGTCGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTTTGTATCTATCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTATATAACAGATAATACCTATAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATTCTTAAGTCTTTGAGCTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAAATACCAAATCTGCAGTTGGAATTTCTGGGTTACTACCTTGCTGAGCTTAGCTTACTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCTTCAGTTGTATTTCTTGCAAAATTTATCATCCGACCGAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTCATTCTGTTACATGATTTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCCGTGAGAGAAAAATACAAACTACATAGGTTCAAGTGTGTTGCAATGATGCCTTCACCTCCTGAGATACCGTTCTCCTATTTTGAAGAAGCTTAG | 1092 | 44.32 | MAAAENCSRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIPNVNGSVAPQKRKAKSQMKKCKPKKRSKIGVAPTIKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLSFEMGNPTAKTFLRQIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 23165205 | 23167558 | - | Lsi08G015050.1 | Lsi08g01505 | 669431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01505 | 363 | Gene3D | - | 108 | 348 | - | - | |
| Lsi08g01505 | 363 | SMART | cyclin_7 | 243 | 321 | IPR013763 | - | |
| Lsi08g01505 | 363 | SMART | cyclin_7 | 146 | 230 | IPR013763 | - | |
| Lsi08g01505 | 363 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lsi08g01505 | 363 | Pfam | Cyclin, N-terminal domain | 108 | 236 | IPR006671 | - | |
| Lsi08g01505 | 363 | CDD | CYCLIN | 140 | 229 | IPR013763 | - | |
| Lsi08g01505 | 363 | ProSitePatterns | Cyclins signature. | 141 | 172 | IPR006671 | - | |
| Lsi08g01505 | 363 | CDD | CYCLIN | 239 | 320 | IPR013763 | - | |
| Lsi08g01505 | 363 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 362 | - | - | |
| Lsi08g01505 | 363 | Pfam | Cyclin, C-terminal domain | 240 | 352 | IPR004367 | - | |
| Lsi08g01505 | 363 | Gene3D | - | 124 | 237 | - | - | |
| Lsi08g01505 | 363 | PIRSF | Cyclin_A_B_D_E | 1 | 357 | IPR039361 | - | |
| Lsi08g01505 | 363 | SUPERFAMILY | Cyclin-like | 97 | 236 | IPR036915 | - | |
| Lsi08g01505 | 363 | SUPERFAMILY | Cyclin-like | 239 | 354 | IPR036915 | - | |
| Lsi08g01505 | 363 | PANTHER | CYCLINS | 24 | 362 | IPR039361 | - | |
| Lsi08g01505 | 363 | SMART | Cyclin_C_2 | 239 | 352 | IPR004367 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01508 | Lsi08g01505 | CCT | |
| Lsi04g01508 | Lsi08g01505 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g01152 | Lsi-Chr8:20147136 | Lsi08g01505 | Lsi-Chr8:23165205 | 8.79E-79 | dispersed | |
| Lsi08g01505 | Lsi-Chr8:23165205 | Lsi10g01118 | Lsi-Chr10:15432307 | 4.16E-39 | dispersed | |
| Lsi08g00456 | Lsi-Chr8:12228253 | Lsi08g01505 | Lsi-Chr8:23165205 | 3.16E-99 | transposed | |
| Lsi03g00554 | Lsi-Chr3:6711122 | Lsi08g01505 | Lsi-Chr8:23165205 | 1.46E-99 | wgd | |
| Lsi04g01508 | Lsi-Chr4:22713118 | Lsi08g01505 | Lsi-Chr8:23165205 | 3.34E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01505 | K06627 | - | csv:101206145 | 658.292 |