Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01506 ATGTGGTTCATCTGTATTTTCATTTTAGCTTTTGAAGCTTCACTTTCTGTTACCGTTGGATCCTCCATCTCCAGCCTTGAATCAGACAAGCAATCTTTGATTTCCCTCAAGTCTGGATTCAATAATCTTAATCTTTACGACCCTTTATCTTCTTGGGATCATAATTCATCTCCTTGCAATTGGACGGGAGTAACCTGCAATGAAGATAGTGAAAGAGTTGTTGAGCTTGATCTTTCTGGGTTGGCTCTTGCAGGGTCTCTGCATATGCAAATTGGCAATCTTTCATTCCTCAAATCCCTTCAACTTCAAAACAACCAATTAACAGGCCCAATTCCTATTCAAATTGGCAATCTTTTTCGCTTACAAGTTCTGAATATGAGCTTCAATTACATAAGAGGTAGCCTCCCTTTCAACATGAGTGGAATGACAGAGCTTGAGATTCTTGACTTGACTTCGAACAGAATTACAAGCCAAATTCCAGAAGGACTTAGCCAATTGACAAAGCTCAAAGTTTTGAACCTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTTTCTTCTCTTATAACCTTCAATTTAGGAACCAATTCAGTGAGTGGTTCGATTCCTTCCGAATTGGGTTATCTTCAAAATTTGAAGGACTTCATGATTTCCATTAATAATTTCAGTGGCATTGTTCCCTCGACCATCTACAACATGTCTTCATTGGTTACTTTGATATTAGCTGCAAATCGTCTTCATGGAACACTCCCCAAGGATTTTGGAGATAATCTCCCAAATCTTTTGTTCTTCAATTTCTGCTTCAATAGATTTTCAGGGACAATTCCAGAATCAATGCACAATATGACCCAAATACGAATTATTCGCTTTGCTCATAACCTTTTTGAAGGCACAATCCCACCAGGTTTGGAAAATTTACCTAATCTTCAAATGTATTATATTGGACACAACAAGATCGTTAGTTCAGGTCCAAATGGGCTTAGTTTCATCTCTTCATTAACCAATAGCTCTCGTCTTACTTTCATTGCTGTTGATGAAAACTATTTAGAAGGTGTGATTCCTAAATCCATTGGAAATCTTTCTAAAGTGTTTTCAAGATTGTACATGGGAGGGAATCGAATTTATGGGAATATACCATCTTCAATTGGTAATCTTCGTACCTTAACTCTGTTGAATTTGAACAAAAACTTGTTATCTGGTGAAATCCCACCTGAAATTGGCCAATTGGAGCAATTACAATTGTTGGGATTAGCTAAAAATCGACTATTTGGTAGAATTCCAAGCTCATTGGGAAACCTTAGAAAATTAAACCACATTGATTTGTCAGAAAACAACCTTATTGGGAACATCCCCATTTCTTTTGGGAACTTCACAAACTTGCTTGCAATGGATTTGTCAAACAATAAGCTCAGTGGGGAAATTCCCAAAGAGGCTCTAAATTATCCTAGTTTGAGTATGATTTTGAATCTTTCTAACAACATGCTAAGTGGGAATTTGCCACAAGAAATTGGGTTCCTTGAAAATGTTGAGAAAATTGACATCTCTGAAAATCTCATTTTTGGCAACATTCCTCCTTCCATCGTTGGCTGCAAGAGCTTGGAGGTATTGACAATGGCCAAGAATGAATTTTCAGGGCAAATTCCAAGTACTCTTGGAGAAATCCTGGGGCTTCGAGCTTTAGATCTTTCCTCCAACAAACTTTCAGGCCCCATTCCTAAGAATCTTCAAAACAGAGCAGCAATACAGCTCTTGAATCTGTCATATAACGATCTCGAAGGAGTAGTCTCTGAAGATGGAAGAGCCAATTTTGAAGGAAACCCAAAGCTTTGCTTGCCTTCCTTATGTCAAAATAACAAACCCCACAACAAAAAAAGAATCAAAATCATATCTTTAGCAGTCATCTTCTCAACATTAGCACTCTGTTTCACACTGGGAACTTGGTTTCATCTGGCTAAGAAAAAGTCAAAAACTTCACCATCGACATCAACTGATGAACTGATAAAAAGGCATCACGAAATGGTCTCATACGAGGAGATTCGAAGCGGCACTGGAAATTTCAGTGAGGAAAATTTGGTGGGAAAGGGAAGTTTTGGGTCAGTTTACAAAGGGTATCTAGATCTAAATGGAATAGAAGGGGGAGTTTTTGCAATCAAAGCGTTGAACATTGAACGAAGTGGGTATATAAAGAGCTTTTTGGCGGAGTGTGAAGCATTGAGAAACGTGAGACATAGGAATTTAGTGAAACTCATTACATCTTGTTCGAGTATAGATTATGAAGGGAGGGATTTTAGAGGTTTGGTTTATGAGTATTTGTGTAATGGAAGCTTGGAGGAGTGGATTCATGGGGAAAGGCATCACTTGGATGGAAGTGGGTTGGATTTATTGGAGAGATTGAAGATTGGGATTGATGTTGGGTGTGTTTTGGAGTATCTTCACCATGGGTGTCAAGTGCCGATTGTTCACTGTGATTTGAAGCCAAGTAACATTCTATTGGCGGAAGATATGAGTGCAAAAGTTGGGGACTTTGGATTGGCCAGATTGTTGATGGAAAATGAGGCAAATCAATATTCTTCCATCACTTCCTCTCATGTTCTTCAAGGCTCCATTGGTTATATTCCACCAGAATACGGCATGGGAAGATCGCCAACGGTGGCCGGAGATGTATACAGTTTTGGGATAACTCTGTTGGAGCTTTTTACTGGGAAGAGACCGACCGATGAAGGATTTACAGAAGAACAAAATCTAATTAAATGGGTTCAATCGACTTATTTGAGAGATTTGATGCAAAGAGTTGTGTCTCCTAATAACCAATTAATTAGGCTAATTGGGTTCCATTGTTGTCGCTACGAAGGTCGACAAATTAGTGAACATAACCAAATGGATTGCTTGATTGAAGTCATCAACGTTGCCACCTCTTGCGCTGCTCATTCTGTTAATGAACGCATTACCATTAAGGATGCTCTTTCCAGGCTTCAAAATGCTAGAAATTCCATGCTGACAATCAGTTGA 3024 38.92 MWFICIFILAFEASLSVTVGSSISSLESDKQSLISLKSGFNNLNLYDPLSSWDHNSSPCNWTGVTCNEDSERVVELDLSGLALAGSLHMQIGNLSFLKSLQLQNNQLTGPIPIQIGNLFRLQVLNMSFNYIRGSLPFNMSGMTELEILDLTSNRITSQIPEGLSQLTKLKVLNLGQNHLYGTIPPSFGNLSSLITFNLGTNSVSGSIPSELGYLQNLKDFMISINNFSGIVPSTIYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGTIPPGLENLPNLQMYYIGHNKIVSSGPNGLSFISSLTNSSRLTFIAVDENYLEGVIPKSIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRTLTLLNLNKNLLSGEIPPEIGQLEQLQLLGLAKNRLFGRIPSSLGNLRKLNHIDLSENNLIGNIPISFGNFTNLLAMDLSNNKLSGEIPKEALNYPSLSMILNLSNNMLSGNLPQEIGFLENVEKIDISENLIFGNIPPSIVGCKSLEVLTMAKNEFSGQIPSTLGEILGLRALDLSSNKLSGPIPKNLQNRAAIQLLNLSYNDLEGVVSEDGRANFEGNPKLCLPSLCQNNKPHNKKRIKIISLAVIFSTLALCFTLGTWFHLAKKKSKTSPSTSTDELIKRHHEMVSYEEIRSGTGNFSEENLVGKGSFGSVYKGYLDLNGIEGGVFAIKALNIERSGYIKSFLAECEALRNVRHRNLVKLITSCSSIDYEGRDFRGLVYEYLCNGSLEEWIHGERHHLDGSGLDLLERLKIGIDVGCVLEYLHHGCQVPIVHCDLKPSNILLAEDMSAKVGDFGLARLLMENEANQYSSITSSHVLQGSIGYIPPEYGMGRSPTVAGDVYSFGITLLELFTGKRPTDEGFTEEQNLIKWVQSTYLRDLMQRVVSPNNQLIRLIGFHCCRYEGRQISEHNQMDCLIEVINVATSCAAHSVNERITIKDALSRLQNARNSMLTIS 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23170049 23174187 - Lsi08G015060.1 Lsi08g01506 669432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01506 1007 ProSitePatterns Protein kinases ATP-binding region signature. 697 723 IPR017441 GO:0005524
Lsi08g01506 1007 SUPERFAMILY L domain-like 371 617 - -
Lsi08g01506 1007 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Lsi08g01506 1007 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 17 1002 - -
Lsi08g01506 1007 Gene3D Transferase(Phosphotransferase) domain 1 776 1005 - -
Lsi08g01506 1007 PANTHER OS04G0122200 PROTEIN 17 1002 - -
Lsi08g01506 1007 SUPERFAMILY L domain-like 52 324 - -
Lsi08g01506 1007 ProSiteProfiles Leucine-rich repeat profile. 144 167 IPR001611 GO:0005515
Lsi08g01506 1007 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lsi08g01506 1007 SMART LRR_sd22_2 142 165 - -
Lsi08g01506 1007 SMART LRR_sd22_2 311 340 - -
Lsi08g01506 1007 SMART LRR_sd22_2 511 530 - -
Lsi08g01506 1007 SMART LRR_sd22_2 166 192 - -
Lsi08g01506 1007 Gene3D Ribonuclease Inhibitor 22 86 IPR032675 -
Lsi08g01506 1007 Gene3D Ribonuclease Inhibitor 87 331 IPR032675 -
Lsi08g01506 1007 Pfam Protein kinase domain 692 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01506 1007 SUPERFAMILY Protein kinase-like (PK-like) 665 996 IPR011009 -
Lsi08g01506 1007 Gene3D Ribonuclease Inhibitor 332 626 IPR032675 -
Lsi08g01506 1007 SMART serkin_6 691 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01506 1007 Gene3D Phosphorylase Kinase; domain 1 652 775 - -
Lsi08g01506 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Lsi08g01506 1007 SMART LRR_typ_2 142 165 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 166 189 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 390 414 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 94 118 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 462 486 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 438 461 IPR003591 -
Lsi08g01506 1007 SMART LRR_typ_2 238 262 IPR003591 -
Lsi08g01506 1007 ProSiteProfiles Protein kinase domain profile. 691 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01506 Lsi-Chr8:23170049 Lsi03g02194 Lsi-Chr3:33014117 0 dispersed
Lsi08g01506 Lsi-Chr8:23170049 Lsi08g01507 Lsi-Chr8:23175604 2.28E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83864 PF00069 Pkinase 2.40E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01506 - - csv:101219969 1692.17