Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01509 ATGTTTCAGTTCCTCAGCTTATCTCTACCATTTCTTAACTATCTTTTCTTCCCAACAATAATAATCTTCCTTCTCTTCCATTTCCTTGCAACCAAAAACCCAGACCGGAGGCGCCTCCCGCCGAGCCCGGTCGGTATCTCCTTCCCCATTCTTGGCCATCTCCACCTTCTCAAGAAGCCCCTCCACCGGACTCTCGCAAAACTCTCCGCCCAACACGGCCCCATTCTCCTCCTCCACTTCGGCTCCCGCCCCGTCCTCCTAGTCTCCTCCCCATCCGCCGCACAAGAATGCCTCACCAAAAACGACATCACTTTTGCCACCCGCCCCCGCCTCTCCGTCGGAAAGCACCTCGGCTGCAACTACACCACCCTCCTCTGGGCCCCTTATGGACCCCACTGGCGCAACCAAAGGCGCATTGCCACCCTCCAGATTCTCTCACCCACCCGAATCCAGATGTATGGCAACGTGAGAACAGAGGAAGTGAAGTTCTTGATTCGCAGGCTGTGCGGAGGCCGGGTGGGGACCGGAGAAAATGGGTTTCGAGCGGTGGAGATGAAGAGGATGTTTTTCGAGACGGTACTCAATATCATGATGAGGATGATCGCCGGTAAGCGATATTGCGGGGAGAGAGAATCGGCGGAGGCAGAGAGGTTTAGAGAGATAGTGAAAGAGGGGTTTGAAGTGAGTGGGGCTACGAATTTGGGGGACTTTTTGCCGAATTTTGTGAAATGGGTTGGTTTGTGGAATGGAATTGAGAAAAGGATGGGGAGATTGCAAGGTTTGAGAGAAGAGTTTATGCAGAGTTTGATTGAGGAACGACGAAGGATGAGTAGGGATGATGGAGATCGAATGAAAGGAAGCAGAGTAATGGCGGATGTCCTTTTGGATTTACAGCAAACTGAACCTCACTATTACACAGATGCTTTCATTCGAGGCATGATGCAAGGAATGCTGTCAGCAGGTACAGACACATCATCAGCAACAATGGAATGGGCACTTTCACTATTGCTCAACAACCCACATTCCCTCCTCAAAGCCCAAGCAGAAATCGATTCCCACGTCGGTTCAAACAGACTCCTTCAAGAATCTGATCTCTCCAACCTACCCTTCCTCCACTCTGTTCTCAAAGAGACGCTCCGCATTTATCCAGTCGCCCCATTGCTGGTTCCTCACGAATCCTCCCAAGACTGCGTCGTTGGAGGCTTCGACGTGCCTCGGGGCACAATGTTGCTTATAAACAACTGGGCCATTCAAAATGATGCTGACTCATGGCCAGACCCAATAGAGTTTAGGCCTGAGAGGTTCCAGGCTGCAGGGGAAGTGGAGGAGGGGTGGCGGTGGCTGCCGTTTGGGGCGGGGCGGAGGGGCTGTCCCGGTGAGGGATTGGCGATTCGGATGATCGGATTGACTTTGGGGTGTTTGATTCAATGTTTTGAGTGGCAGAGAGTAGGGGAGGAGATGGTGGATTTGAGCGAAGGCGGTGGCCTCACAATGCCTAGAGCTAAACCATTGTGGGCAAACTGTAGGCCACGCCCCATTTTACTTCGTCTTCTGTCCACACTTTGA 1566 52.36 MFQFLSLSLPFLNYLFFPTIIIFLLFHFLATKNPDRRRLPPSPVGISFPILGHLHLLKKPLHRTLAKLSAQHGPILLLHFGSRPVLLVSSPSAAQECLTKNDITFATRPRLSVGKHLGCNYTTLLWAPYGPHWRNQRRIATLQILSPTRIQMYGNVRTEEVKFLIRRLCGGRVGTGENGFRAVEMKRMFFETVLNIMMRMIAGKRYCGERESAEAERFREIVKEGFEVSGATNLGDFLPNFVKWVGLWNGIEKRMGRLQGLREEFMQSLIEERRRMSRDDGDRMKGSRVMADVLLDLQQTEPHYYTDAFIRGMMQGMLSAGTDTSSATMEWALSLLLNNPHSLLKAQAEIDSHVGSNRLLQESDLSNLPFLHSVLKETLRIYPVAPLLVPHESSQDCVVGGFDVPRGTMLLINNWAIQNDADSWPDPIEFRPERFQAAGEVEEGWRWLPFGAGRRGCPGEGLAIRMIGLTLGCLIQCFEWQRVGEEMVDLSEGGGLTMPRAKPLWANCRPRPILLRLLSTL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23190408 23192215 + Lsi08G015090.1 Lsi08g01509 669435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01509 521 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 SUPERFAMILY Cytochrome P450 40 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 Pfam Cytochrome P450 46 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01509 521 PANTHER CYTOCHROME P450 82C3-RELATED 20 519 - -
Lsi08g01509 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Lsi08g01509 521 PANTHER CYTOCHROME P450 81E8 20 519 - -
Lsi08g01509 521 Gene3D Cytochrome P450 33 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01509 - - - csv:101220916 878.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01506 Lsi08g01509 CCT
Lsi04g01506 Lsi08g01509 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01509 Lsi-Chr8:23190408 Lsi01g00942 Lsi-Chr1:7626212 7.05E-163 dispersed
Lsi04g00544 Lsi-Chr4:5002426 Lsi08g01509 Lsi-Chr8:23190408 6.78E-25 transposed
Lsi04g02368 Lsi-Chr4:30823262 Lsi08g01509 Lsi-Chr8:23190408 0 transposed
Lsi01g00941 Lsi-Chr1:7610909 Lsi08g01509 Lsi-Chr8:23190408 1.00E-59 wgd
Lsi04g01505 Lsi-Chr4:22690699 Lsi08g01509 Lsi-Chr8:23190408 3.18E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g687 . . . . Bpe02g00445 . . . . . . . . . . . . . . . . . . . Cla08g01605 . . . . . . . . . . Lsi04g01506 Csa04g02458 . Cme03g02084 . . . . . . . . . . . . . . . . Cpe02g00207 . . . . . . . Cla05g02088 . . . . . . Lsi08g01509 . Chy07g00172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477