Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01510 ATGAAACATGCAATGGCGTTCACCTTAGAAGTGGCAAGTGAAGGTGACGGTGCAATGAAAGGACGCCACGTAGACGTCCGCACTAACCAAAACTGCAAGGATGAAGAGGTGTCAAAGCATGATTGGTCAGTCTCCATAGCAATTATTTCCAAGCAGAAGTCGAAAACTCTAGCGAACTTCCTTCATCTTCTTACTTTGCTTCTCGTTCTCACTTCCTTCATGGAGCTCTCGTTAGGTGCCCTAGGTTTTTGCGGGTCGAAATGTGGAAGGAGATGTGCAAAAGCTGGGGTGCAGGATCGGTGCATGAAGTACTGTGGGATATGCTGCGAGAAATGCGGGTGTGTGCCGTCTGGGACTTATGGGAATAAACATGAATGCCCTTGTTATGGGAACATGAAGAACTCCAAGGGCAAGTCCAAGTGTCCTTAA 429 47.55 MKHAMAFTLEVASEGDGAMKGRHVDVRTNQNCKDEEVSKHDWSVSIAIISKQKSKTLANFLHLLTLLLVLTSFMELSLGALGFCGSKCGRRCAKAGVQDRCMKYCGICCEKCGCVPSGTYGNKHECPCYGNMKNSKGKSKCP 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23193981 23195157 - Lsi08G015100.1 Lsi08g01510 669436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01510 142 Pfam Gibberellin regulated protein 83 142 IPR003854 -
Lsi08g01510 142 PANTHER GIBBERELLIN REGULATED PROTEIN 59 142 - -
Lsi08g01510 142 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 59 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01510 - - - csv:101206381 156.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01745 Lsi-Chr4:24750180 Lsi08g01510 Lsi-Chr8:23193981 2.31E-13 dispersed
Lsi08g01325 Lsi-Chr8:21566057 Lsi08g01510 Lsi-Chr8:23193981 4.28E-14 dispersed
Lsi09g00921 Lsi-Chr9:11377348 Lsi08g01510 Lsi-Chr8:23193981 1.20E-15 transposed
Lsi01g00932 Lsi-Chr1:7534930 Lsi08g01510 Lsi-Chr8:23193981 2.80E-22 wgd
Lsi03g00559 Lsi-Chr3:6743934 Lsi08g01510 Lsi-Chr8:23193981 2.31E-16 wgd
Lsi03g01039 Lsi-Chr3:19955854 Lsi08g01510 Lsi-Chr8:23193981 3.53E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g681 . . . . . . . . Cmo05g00156 . . . . . Sed10g1973 . . Bhi04g00396 Tan02g1765 Cmetu03g1936 . Hepe08g1317 . Lcy13g2120 . . . . . . . Cone4ag1605 . . . . . . . . . . Bda01g01598 Bpe02g01785 . Bma01g00670 . . . . . Cma05g00155 Car05g00135 . Cpe11g00131 . . . . . . . . . . . . . . . Lsi08g01510 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001419 2 3 0 2 2 3 2 3 3 1 3 3 2 3 2 2 3 2 2 3 3 3 2 0 3 3 3 2 3 3 71