Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01516 ATGTCCAGGTCCCGAGTTTACGCCGACGTCAATGTTCACCGCCCTAGAGATTACTGGGACTACGAATCTCTCGCCGTCCAATGGAGGGTTCGATTTGCTTGGGATCTCTTCACTTTAGCTTCTTGTCTATTTTTCTTTGCCCAATGTCTTGGGGATCGTTGTCTGGCGTTCGACCTTTGTGTTCTTGATATTGTTTTGGACCACGAGGGAAGAAGGTTAGGGACCAATCCCGACCTTTGGGTTGAAACCATTCTAGGATCTGTTATTACCTTATCTCTTGGAGTGGACTGTAGCTCGGGGAGGAGCCTCTGTGTATGTTCTACAGTTCAGATAAAGAGGGAGATAAAGATATTACAGAATCTCTGTGGTGGCCCAAATATTGTGAAACTGCTAGATATAGTCAGAGATCAGCACTCAAAAACTCCTAGCTTAATCTTTGAATATGTGAATAGTACAGATTTCAAAATTTTGTACCCTACGTTGACTGATTATGACATACGCTACTATATATACGAGCTTTTGAAGGCATTGGATTACTGCCATTCACAGGGCATAATGCATAGAGATGTAAAGCCTCACAATGTTATGATTGACCATGAATTGCGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAGTTCTACCATCCTGGAAAGGAATACAATGTCCGAGTGGCATCTAGGTATTTCAAAGGGCCAGAACTTCTTGTAGACTTACAAGACTATGACTATTCCTTGGATATGTGGAGCCTGGGTTGCATGTTTGCTGGAATGATTTTCCGGAAGGAACCCTTCTTCTATGGTCATGACAATCATGACCAGCTTGTCAAAATTGCTAAGGTGTTGGGGACAGATGAGTTGAATGCATATCTGAATAAATATCAACTGGTTCTTGATCCACAACTTGAAGCACTTGTTGGCAGGCATAGCCGTAAGCCATGGTCAAGATTTATCAATGCTGATAATCAGCATCTTGTATCCCCTGAGGCCATTGATTTTTTGGATAAGCTCCTTCGATATGACCATCAAGATAGGCTCACTGCAAGAGAAGCAATGGCTCATCCATACTTCTTCCAGGTGAGAACTGCCGAGAACAGCCGGCTACGAACGCAATAA 1116 43.1 MSRSRVYADVNVHRPRDYWDYESLAVQWRVRFAWDLFTLASCLFFFAQCLGDRCLAFDLCVLDIVLDHEGRRLGTNPDLWVETILGSVITLSLGVDCSSGRSLCVCSTVQIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYQLVLDPQLEALVGRHSRKPWSRFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRTAENSRLRTQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23237930 23243251 - Lsi08G015160.1 Lsi08g01516 669442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01516 371 SUPERFAMILY Protein kinase-like (PK-like) 108 361 IPR011009 -
Lsi08g01516 371 ProSiteProfiles Protein kinase domain profile. 44 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01516 371 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 29 IPR045216 GO:0004674|GO:0006468
Lsi08g01516 371 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 109 371 - -
Lsi08g01516 371 PANTHER CASEIN KINASE II SUBUNIT ALPHA 109 371 IPR045216 GO:0004674|GO:0006468
Lsi08g01516 371 Pfam Protein kinase domain 110 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01516 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Lsi08g01516 371 Gene3D Transferase(Phosphotransferase) domain 1 149 357 - -
Lsi08g01516 371 Gene3D Phosphorylase Kinase; domain 1 110 148 - -
Lsi08g01516 371 SMART serkin_6 83 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01516 371 CDD STKc_CK2_alpha 111 357 IPR045216 GO:0004674|GO:0006468
Lsi08g01516 371 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01516 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] - zju:107420584 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00906 Lsi-Chr1:7310849 Lsi08g01516 Lsi-Chr8:23237930 0 dispersed
Lsi01g00916 Lsi-Chr1:7411042 Lsi08g01516 Lsi-Chr8:23237930 4.59E-13 dispersed
Lsi08g01516 Lsi-Chr8:23237930 Lsi03g01146 Lsi-Chr3:21728778 1.04E-34 dispersed
Lsi01g00914 Lsi-Chr1:7404359 Lsi08g01516 Lsi-Chr8:23237930 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000622 5 3 4 4 5 3 4 3 3 3 3 3 5 2 3 3 3 5 3 3 3 4 3 3 2 3 3 5 4 3 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83866 PF00069 Pkinase 1.20E-56 CL0016 Lsi PK