Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01520 ATGAAATCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCGCCGTCACCGTCACCGTCGCACTGCAGGACCACCGCGGTCTTCACTCCTCGTCGACGGATCGGTTCTTCGTCAACAGCCGTCGGCGGCGCTTTCTCGTCGTGTCGTAAACATTTGACTCGCTTTCCACAGCATCGATCTTCGTTTTGGCCTCTGCGATGCAATGTGAGGGAGACGGTGCCGGATCAAGAAATGGCGTCCACCAATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGATACTATCGATTTGTTCGTGGAGAGGTACAGAGAGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGAGGGTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCGAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGATAAAATGGAGATGCATGTAGGAGCTGTTGAAGCTGGAGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGCGTGCAGCAATAAGGCTACTTGGTAGGCGAGTTGGCGTTGAGGTGGTCGAGTGTGCATGTGTGATCGAGCTGGATGGACTAAAGGGCCGTGAACGATTGGGAGACAGACCTCTATTCGTTCTAGTTAATGCAGCAGGATGA 786 49.11 MKSVSNLTSSLPLSPSPSPSHCRTTAVFTPRRRIGSSSTAVGGAFSSCRKHLTRFPQHRSSFWPLRCNVRETVPDQEMASTNEQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYREKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKMEMHVGAVEAGERALVIDDLIATGGTLRAAIRLLGRRVGVEVVECACVIELDGLKGRERLGDRPLFVLVNAAG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23263235 23266647 + Lsi08G015210.1 Lsi08g01520 669446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01520 261 MobiDBLite consensus disorder prediction 1 24 - -
Lsi08g01520 261 SUPERFAMILY PRTase-like 90 254 IPR029057 -
Lsi08g01520 261 Pfam Phosphoribosyl transferase domain 118 242 IPR000836 -
Lsi08g01520 261 CDD PRTases_typeI 125 256 IPR000836 -
Lsi08g01520 261 Gene3D - 78 259 IPR029057 -
Lsi08g01520 261 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 82 259 - -
Lsi08g01520 261 TIGRFAM apt: adenine phosphoribosyltransferase 92 258 IPR005764 GO:0003999|GO:0005737|GO:0006168
Lsi08g01520 261 PANTHER BNAA09G27900D PROTEIN 82 259 - -
Lsi08g01520 261 Hamap Adenine phosphoribosyltransferase [apt]. 91 259 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01520 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101208231 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01213 Lsi-Chr8:20647915 Lsi08g01520 Lsi-Chr8:23263235 2.82E-82 dispersed
Lsi08g01520 Lsi-Chr8:23263235 Lsi09g00406 Lsi-Chr9:4288937 6.99E-79 dispersed
Lsi08g01520 Lsi-Chr8:23263235 Lsi07g01320 Lsi-Chr7:19397679 8.34E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139