Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01523 ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCGATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAGTGAGCTTCAATTACCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGTAACTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACTCATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTTTTTTATGGCAATTGACGAGAGGAATTTTGGGTCTTCATTTTTTTCCGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCACCGCCGAAGGGTTAGATTCCGGCACTGAGAGATTCATTGAGAATAATGTACTACAGGGTAGCCACCCGCCGCCGTTGCCGCTTGTAGATTTCACCAGTGCCGGAAACAAACCAATTGCTTTGAAAAGGAAAGTCAATGGCGGAGACATTTCTGATAATCAGAAGAAGAAAACTCGGATCTCCTCACATGGGCAGAAGAAGAAGAAAACAGAGCAGAAGAGAAGAGGGGAAAATGTAGAGGAAGAAGGGAATGCAAGTGGAGCATCAGAAGGACAGAGCTCCATTAGTTACAGTTCTGATCAGGAAGAGAATGGTTCCGAGGAGGGCAACCGCGGCGGCTCAGGCGCCACCTCCGACGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGGTCGGCAACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGGGAAAGAATCAATGAACGATTGAGAATCTTACAGAAGCTTGTTCCGAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGCCTTCAACAGAACCTCTCTCCATTTCTTTCACATTGA 1014 45.86 MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANYSSELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNALAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKKTRISSHGQKKKKTEQKRRGENVEEEGNASGASEGQSSISYSSDQEENGSEEGNRGGSGATSDGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNLSPFLSH 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23282865 23285123 + Lsi08G015230.1 Lsi08g01523 669449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01523 337 CDD bHLH_AtIND_like 252 314 - -
Lsi08g01523 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Lsi08g01523 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 313 IPR036638 GO:0046983
Lsi08g01523 337 MobiDBLite consensus disorder prediction 204 255 - -
Lsi08g01523 337 Gene3D - 253 316 IPR036638 GO:0046983
Lsi08g01523 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 334 - -
Lsi08g01523 337 SMART finulus 257 306 IPR011598 GO:0046983
Lsi08g01523 337 MobiDBLite consensus disorder prediction 161 263 - -
Lsi08g01523 337 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983
Lsi08g01523 337 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 5 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01492 Lsi08g01523 CCT
Lsi04g01492 Lsi08g01523 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01523 Lsi-Chr8:23282865 Lsi06g01169 Lsi-Chr6:21956891 1.58E-21 dispersed
Lsi11g01483 Lsi-Chr11:23334991 Lsi08g01523 Lsi-Chr8:23282865 2.30E-12 dispersed
Lsi02g02227 Lsi-Chr2:28698645 Lsi08g01523 Lsi-Chr8:23282865 7.10E-07 transposed
Lsi09g00933 Lsi-Chr9:11651483 Lsi08g01523 Lsi-Chr8:23282865 3.09E-09 transposed
Lsi03g00573 Lsi-Chr3:7014859 Lsi08g01523 Lsi-Chr8:23282865 2.69E-56 wgd
Lsi03g01026 Lsi-Chr3:19818463 Lsi08g01523 Lsi-Chr8:23282865 2.07E-25 wgd
Lsi04g01492 Lsi-Chr4:22609862 Lsi08g01523 Lsi-Chr8:23282865 2.10E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25831 PF00010 HLH 1.00E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01523 - - csv:101221853 499.204