Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01525 ATGGGGACGGAGAATCCCATGAATTTTACTTACATGGGGCGAAGCTTTGATGATCTGAGCAACGGGGATAGTTCTGGGGCTTTTAGTGACTGTAATAGCGATAGATCCGGGGAGTTTCCGACGGCGTCGTCGCAGAGTCGGCGGCTTTTGATTGCTTGTGCTTCCGATAACTCTGATGAGCTAATTCGGCATCTGGTGTTGGACCTTGAGTCCTGTTCGATTGAGGAGCAGAAGCAAGCAGCCATGGAGATCAGACTTCTCGCCAAGAACAAACCGGAGAATCGATTGAAGATCGCGAAAGCCGGTGCGGTTAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATCTGTCGCTGTGCGACGAGAATAAGGAATTGATAGCGGCGTCTGGTGCGATTAAGCCTCTGGTGAGAGCTCTTATGTCCGGTACTCCAACGGCGAAGGAGAACGCGGCTTGTGCTTTACTGCGACTTTCGCAAATGGAAGAAAACAAGATAGCAATCGGACGGTCAGGAGCGATTCCGCTTCTGGTGAATCTTTTGGAGAACGGCGGATTTCGTGGAAAGAAGGACGCGTCGACGGCTCTGTATTCGTTGTGCTCGGTTAAAGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTAATGGCGGATTTTGGGTCAAACATGGTGGATAAGTCGGCGTTCGTTCTGAGCGTGTTGGTCTCGATGCCGGAAGCCAGGACGGCTCTGGTAGAAGAAGGCGGAATTCCGGTACTGGTGGAATTAGTGGAGGACGGAACTCAGCGGCAAAAGGAAATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGATAGCGTCCTTTACCGTACAATGGTGGCCCGTGAAGGTGCAATTCCGCCGCTAGTCGCTTTGTCACAATCCGGCACCAATCGCGCCAAACAAAAGACAAACCGGGTCGGGCCGGCGCATGTGTGA 1011 52.32 MGTENPMNFTYMGRSFDDLSNGDSSGAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDELIRHLVLDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLISCTDPQLQEYGVTAILNLSLCDENKELIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKIAIGRSGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSMPEARTALVEEGGIPVLVELVEDGTQRQKEIAAVILLQICEDSVLYRTMVAREGAIPPLVALSQSGTNRAKQKTNRVGPAHV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23309098 23314405 - Lsi08G015250.1 Lsi08g01525 669451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01525 336 SUPERFAMILY ARM repeat 59 325 IPR016024 -
Lsi08g01525 336 Gene3D - 199 332 IPR011989 -
Lsi08g01525 336 Gene3D - 39 197 IPR011989 -
Lsi08g01525 336 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 329 - -
Lsi08g01525 336 SMART arm_5 214 254 IPR000225 GO:0005515
Lsi08g01525 336 SMART arm_5 91 131 IPR000225 GO:0005515
Lsi08g01525 336 SMART arm_5 132 172 IPR000225 GO:0005515
Lsi08g01525 336 SMART arm_5 173 213 IPR000225 GO:0005515
Lsi08g01525 336 SMART arm_5 255 295 IPR000225 GO:0005515
Lsi08g01525 336 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515
Lsi08g01525 336 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 185 IPR000225 GO:0005515
Lsi08g01525 336 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515
Lsi08g01525 336 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515
Lsi08g01525 336 Pfam Armadillo/beta-catenin-like repeat 133 171 IPR000225 GO:0005515
Lsi08g01525 336 PANTHER U BOX DOMAIN-CONTAINING 1 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01525 - - - csv:101208714 622.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00483 Lsi-Chr1:4011190 Lsi08g01525 Lsi-Chr8:23309098 1.60E-88 dispersed
Lsi02g02201 Lsi-Chr2:28460002 Lsi08g01525 Lsi-Chr8:23309098 1.29E-18 dispersed
Lsi08g01525 Lsi-Chr8:23309098 Lsi02g01363 Lsi-Chr2:18368167 9.82E-67 dispersed
Lsi08g01525 Lsi-Chr8:23309098 Lsi10g00540 Lsi-Chr10:7732852 1.42E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34