Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01528 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGGAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTCTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCGGCTGCTGTTTTTGATATTCAACGTGCAACTCATTCCGAGGGCCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATATCCTCAGCCATATGGTATCCCGTTGATACTGGACTGTTTGTCACTGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGCGAGTGGGTTTTGGTTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCCCAGCTTGGGAGACGTCCCCCCATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCTCTCTTGGCCAGCCAAGGCTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCATCTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTGCACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGCGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGATGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAACAAACCATTGCAATTAGCCACATGTCAGGATTCAGCCCTTGTATTTGCCCCATGCATGACGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACTGGTGGCAACGATAGGCAAATTCTCGTCTGGTCACCATCCCGGAACTCTACCGAACTGGTACACCTTCTGAACTCATGCCCCATTCATGGAATTGAATTGACTCTCAATGCTGCATATTCTTCCAATAATACCATTGAAGTTGCCCTGGTAGCTTATTCCATTTCAGTGGACTTGCAGGATTGGGAATCGACTGCAGATAAAGATAACTGGAGCGACTGA 1461 44.83 MWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSSTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATCQDSALVFAPCMTTVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELVHLLNSCPIHGIELTLNAAYSSNNTIEVALVAYSISVDLQDWESTADKDNWSD 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23332355 23338008 - Lsi08G015280.1 Lsi08g01528 669454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Lsi08g01528 486 MobiDBLite consensus disorder prediction 274 288 - -
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 219 - -
Lsi08g01528 486 MobiDBLite consensus disorder prediction 257 295 - -
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515
Lsi08g01528 486 SUPERFAMILY WD40 repeat-like 39 436 IPR036322 GO:0005515
Lsi08g01528 486 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Lsi08g01528 486 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Lsi08g01528 486 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Lsi08g01528 486 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Lsi08g01528 486 SMART WD40_4 32 72 IPR001680 GO:0005515
Lsi08g01528 486 SMART WD40_4 85 130 IPR001680 GO:0005515
Lsi08g01528 486 SMART WD40_4 300 338 IPR001680 GO:0005515
Lsi08g01528 486 SMART WD40_4 177 217 IPR001680 GO:0005515
Lsi08g01528 486 SMART WD40_4 386 425 IPR001680 GO:0005515
Lsi08g01528 486 MobiDBLite consensus disorder prediction 13 35 - -
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 133 - -
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 434 IPR001680 GO:0005515
Lsi08g01528 486 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 486 IPR042238 GO:0006283
Lsi08g01528 486 MobiDBLite consensus disorder prediction 20 35 - -
Lsi08g01528 486 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515
Lsi08g01528 486 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Lsi08g01528 486 Pfam WD domain, G-beta repeat 388 425 IPR001680 GO:0005515
Lsi08g01528 486 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Lsi08g01528 486 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Lsi08g01528 486 Gene3D - 1 428 IPR015943 GO:0005515
Lsi08g01528 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01528 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 879.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01528 Lsi-Chr8:23332355 Lsi04g00764 Lsi-Chr4:7142270 3.66E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36