Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01530 ATGCTGTGCGCTTGTTCAGGTGAGCAATTCAAGTTCGAAGAGCCACCGCAGTCCCCAGAGTCGCTTGCGACGAGAGACTTCTCGGCCAGTTGCCTTTCATCAAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGTATAGACATTAGATCTTTGACGCCAAGAATGGTCAAGGCAATCACTGAAAAGATAAGGGAGGAAAAGCCTCGTCCTAAAGGTGACAGTGCCCCCCCTAGTGGTGCAATGTCCATGCATTCTGTTAGCCTACTACTTGAAGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTATGCCTAATGGAATGCCCGAGAGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGACGAGGCCATAAACGCCTATCGCCGCGTACTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGCCCAAGAACGCCTAAAAACAATGTAGAAGAAGCAATCCTTCTGTTGTTAATACTCATGAGGAAAGTGGTGATGCAAGAAATAAACTGGGATCCTGAGATTATGAATCATCTAACTTACGCACTTTCTATCACAAGACAATTTGAATTACTCGCTGAGCATGTGGAACGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTTTATGTTACAATGCAGCAGGACAGAATGAAGTAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCGCATTTTCATTCTTTTTTGTTGCTTGCAAAATTGTGTTCAGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCGTCGAATGATCAATATGGCCAGTGAACAAAGTAAGCATTTCAATCCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCAATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCAGCTGAGAAGCGACCCAAGGACGCTGAAACCATAGTTGATTTTGCTTTGGATGAAGCTGAGAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTCAAAATTGCGCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTAGCACTAATTCAAGCACGAGATGAACTTCAGCTTCAGGCTAAAAACTTTGACCAATCCAAGGACTTCGAACTGGAGGCTGTGGCAGAACGGAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTACCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATGTTCATTGCCCCAGAGGCAAGTATTTTGAAGCTCGATCATTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTATCGATTGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGTTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTCTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCTTCAGAGTTTCGTCTAA 2136 42.88 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREEKPRPKGDSAPPSGAMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESAMPNGMPESIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEVALNLLMKVCGSSEVKHKPHFHSFLLLAKLCSEDTKYARDGIKFARRMINMASEQSKHFNPEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLNRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRPKDAETIVDFALDEAERMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQARDELQLQAKNFDQSKDFELEAVAERNLERAAWQDLATIYSKLASWADAEICLNKAKSLDVHCPRGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23345845 23350890 + Lsi08G015300.1 Lsi08g01530 669456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01530 711 SUPERFAMILY TPR-like 47 343 IPR011990 GO:0005515
Lsi08g01530 711 SUPERFAMILY TPR-like 513 702 IPR011990 GO:0005515
Lsi08g01530 711 Gene3D Tetratricopeptide repeat domain 424 707 IPR011990 GO:0005515
Lsi08g01530 711 Gene3D Tetratricopeptide repeat domain 29 268 IPR011990 GO:0005515
Lsi08g01530 711 PANTHER PROTEIN NPGR1 1 711 - -
Lsi08g01530 711 SMART tpr_5 573 606 IPR019734 GO:0005515
Lsi08g01530 711 SMART tpr_5 672 705 IPR019734 GO:0005515
Lsi08g01530 711 SMART tpr_5 512 545 IPR019734 GO:0005515
Lsi08g01530 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01037 Lsi-Chr5:17918214 Lsi08g01530 Lsi-Chr8:23345845 1.72E-168 dispersed
Lsi08g01530 Lsi-Chr8:23345845 Lsi05g01751 Lsi-Chr5:24912925 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01530 K21843 - csv:101209448 1306.2