Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01532 ATGACGGTCAAACTGTTGGAGTCGCTACCTCCTACAGAAACTTTAGAAATGGAGAGTGGTCTGAAGCTCGTGCCGCGTCTGAAACTCAATTTCACTGTCTATCCTTCAACCCCTTCAGTGAGTAAATCCCTTGATGAGTGGAAGTTGAAGCGAGCCCTCATTGACTTTCTCAAGACTTCGCTTTCGGTTCCGGTTATAGTCCCTGAGGAGGATTTGGTGATCAAACGTATTAAAGAGCTTAAGACACGCAAGCGGGAAGACCCACTTGCTCGCGGTACTCTTTTCGTGCGAGATCTTGGGTTTTTGAAAACCTCTAAGAAGAGATATGAGGAGGATGAAGAAGAGGAAGTCACCGTGTTGGAGAAGAAGTTTTTGGATTGGAGGCGTTTTCTGGTTGAGAAATTGGATGGGATTGAGCTGAATCTTGAGGGGTTCAAATTCAAACTCACTGTTGTTATACCGGAATCCGATAATTTTGAGGTAATGAAGAAAGCTTGGGAGGAGTTTTACGCATTTGGGAATCGTGGATATTCGAGAAGTGGGAGCCAAGGACCTGATACCATTACCTTGAGAGGCGCACCATCAAGGTGGTTTGCTGAGCCTCGGGTTTCGTCTAAGCCCTCCATGTTGGTCACACATACCATCTTTTCTACATTTGGAAGGATAAGGAACCTAAATATTGCTGTGGACGATGATTTTGGTAAGGATGGCAATGAGGATGGAGAAGACATAATTTCAGGTTTACACTGTAAAATAACAGTTCAGTTTGAAAAACATGGGGACTTCTATAATGCTCTAAAGGTGCTGTCTGGTCGCTCGTTGCAGAAGGTAGCCATAAACTTGAAATATCACTCTTATCTAATGTATAAGGACAAATCACAACTCACCCACGGTTTTAATCAAGGATCTCGTCTCTGGGCTGATTACGAGGTCACCTGGGACAAGGATGGCTTTACCCAACACTCAAGAAATCAAACACAGGTTAATGGCAGCAGAGTGCAGGAAATAGCAGCAGGGCAATTTAAGAATGAGGCCTTAAGACGACAACGATATTCAAGCTCCATTCCTGATGATTCACGGCGCAAGAGGTTCAAGCCTCCACAGAGAAGAAGAGATCTTCATTCTTCTGGTGAACAACACTCCAAAGCCATGGCATTTGCAGGCACAACCCAGAAATGTATGGCTTGCGAAAAAACTGTCTATCTCGTCGACAAGCTGACCGCCGATAATCGCATCTACCACAAAGCCTGTTTCAGATGCCACCATTGCAAAGGAACTCTTAAGCTCAGCAACTACAATTCCTTTGAGGGAGTGCTTTATTGCAGGCCACACTTTGATCAGCTCTTTAAGAGGACTGGTAGCCTTGACAAAAGCTTTGAAGGAACACCAAAGATCGTAAAACCAGAGAAACCGATTGATAGCGAGAAACCGACAGCGAACAAGGTTGCTAGCATGTTTGGTGGAACCAGAGATAAATGTCTTGGCTGTAATAACACTGTTTATCCAACAGAAAAGGTTACTGTGAATGGAACTCCATACCATAAAAGTTGCTTCAAATGCTGCCATGGAGGATGCACGATCAGCCCTTCAAACTATATTGCTCACGAGGGACGACTTTACTGCAAGCACCACCACATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAGGGAGACCATGAAAAGATAACAGCAAAGGAGAAAATCAATGGCGGAGAGGTGGTGGCTTCTGAAGCCTGA 1746 44.67 MTVKLLESLPPTETLEMESGLKLVPRLKLNFTVYPSTPSVSKSLDEWKLKRALIDFLKTSLSVPVIVPEEDLVIKRIKELKTRKREDPLARGTLFVRDLGFLKTSKKRYEEDEEEEVTVLEKKFLDWRRFLVEKLDGIELNLEGFKFKLTVVIPESDNFEVMKKAWEEFYAFGNRGYSRSGSQGPDTITLRGAPSRWFAEPRVSSKPSMLVTHTIFSTFGRIRNLNIAVDDDFGKDGNEDGEDIISGLHCKITVQFEKHGDFYNALKVLSGRSLQKVAINLKYHSYLMYKDKSQLTHGFNQGSRLWADYEVTWDKDGFTQHSRNQTQVNGSRVQEIAAGQFKNEALRRQRYSSSIPDDSRRKRFKPPQRRRDLHSSGEQHSKAMAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCNNTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHEKITAKEKINGGEVVASEA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23354657 23361461 + Lsi08G015320.1 Lsi08g01532 669458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01532 581 CDD LIM2_SF3 493 553 - -
Lsi08g01532 581 PANTHER OS06G0237300 PROTEIN 384 568 IPR045268 GO:0051015
Lsi08g01532 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 485 518 - -
Lsi08g01532 581 SMART lim_4 492 544 IPR001781 -
Lsi08g01532 581 SMART lim_4 392 444 IPR001781 -
Lsi08g01532 581 CDD LIM1_SF3 389 451 - -
Lsi08g01532 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 519 558 - -
Lsi08g01532 581 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 384 568 - -
Lsi08g01532 581 ProSitePatterns LIM zinc-binding domain signature. 393 427 IPR001781 -
Lsi08g01532 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 419 459 - -
Lsi08g01532 581 ProSiteProfiles LIM domain profile. 391 451 IPR001781 -
Lsi08g01532 581 MobiDBLite consensus disorder prediction 349 381 - -
Lsi08g01532 581 ProSiteProfiles LIM domain profile. 491 551 IPR001781 -
Lsi08g01532 581 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 386 418 - -
Lsi08g01532 581 Pfam LIM domain 493 547 IPR001781 -
Lsi08g01532 581 Pfam LIM domain 393 447 IPR001781 -
Lsi08g01532 581 Gene3D Cysteine Rich Protein 387 457 - -
Lsi08g01532 581 Gene3D Cysteine Rich Protein 488 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01532 K13169 AKAP17, SFRS17; A-kinase anchor protein 17 - csv:101209693 592.038
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01478 Lsi08g01532 CCT
Lsi04g01478 Lsi08g01532 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02023 Lsi-Chr5:27237030 Lsi08g01532 Lsi-Chr8:23354657 8.86E-16 dispersed
Lsi06g01528 Lsi-Chr6:25664383 Lsi08g01532 Lsi-Chr8:23354657 3.38E-89 transposed
Lsi03g00583 Lsi-Chr3:7247925 Lsi08g01532 Lsi-Chr8:23354657 1.77E-72 wgd
Lsi04g01478 Lsi-Chr4:22508454 Lsi08g01532 Lsi-Chr8:23354657 5.85E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g643 . . . . . . . . Cmo05g00138 Cmo12g00541 Cma01g01782 Cma09g00294 Car01g01390 Car12g00545 Sed05g2633 Cpe06g00204 . Bhi04g00436 Tan02g1031 Cmetu01g2030 . Hepe08g1339 . Lcy13g2137 Cla08g01627 Cam08g2131 Cec08g1716 Cco08g1838 Clacu08g1817 . Cre08g1600 . . Cone17ag0889 Cone20ag0235 Lsi04g01478 Csa04g02483 . Cme03g02108 . . . Bda01g01625 . . . . Sed01g2723 Cmo01g01840 Cmo09g00287 Cma12g00601 Cma05g00134 Car05g00115 Car09g00248 Cpe11g00115 Cpe02g00224 Bhi09g03223 Tan01g4685 Cmetu07g1130 . Hepe01g1834 Mch11g0367 . Cla05g02110 Cam05g2262 Cec05g2283 Cco05g2324 Clacu05g2259 Cmu05g2121 Cre05g2245 Lsi08g01532 Csa02g01888 Chy07g00193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012528 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25832 PF00412 LIM 3.20E-11 CL0167 Lsi TF