Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01534 ATGTTCGCGACGAAGCGTGATGGTGTGATGTATGTCTTTATGCGGATCCGAAACATGGAGCTAGGGAGATCGTTTGGACTGGTTCTCGAAGGGTTGCCTTCAACCGGCTCTGCATATTCTCAGCTTCTTAGTATGAATTTGTCCGATCTCGGTAAATCCTATATCTCTTCACGATTTTGGAAGCTGCGCCAAAGAGTTGTAACAATGGCGCCGAAGGAGGAAGAGGACTCGAGGATCCAGAAGCTCGAATCAGCATGTTCGGATTTGAAAATCCTCCTTCAAGCGTCGACAGAATTGAACGAAAGCCTGGAGAAGATGGAGAAGAATCTTGATTCAATCGACGAATCGCTCACGACAGCGTCGAGAAGCATAATACCTCTTCAATCTTTGGCGATGACGACAAAAGCCCTCGAAACAAGAATCAATCGGGCAGCTTCGCCTGCTCTCAGTCTCCTCGATACTTTTAAGCGATCCGAGTTCCTCCAACGCAAGATTCTCGCGATCTTCGCTAATTTATCGGTGGAAAAATCGCCAGAGGAACGCCTGAAGAAGCTGATCAAACTAGTCAACTGTGTGGATAGGCTGAATGCATCCATAAGCGTGATTAGCCAAGAGGGGGAATCGGTGATCCAGAAACTTCAGGAGGTGGTGGAGTTCTTGAGCAGGACGAAGGCTGCTGATCCACAGCGGACACACAGACTGAAAGAGACGATGATCACTCTCAAAGCTCTGTACGAAACAGAAATTGATGACATGAAGTTTGAGGGGTTGCTTGATGAAGCTCTGCTGAATCTGCAAGATGAATTTGAAAACATATTAAAGAATCTAAAGCATCAAAGAAAACCGAAGTTTGAAGATGGTGAACGAGAAAAGGAAGGTGAAGCAGTGGGGCCTGAGATGGGAAGCGAGTTGGAAATTGAAGCTGCCAAACGAATTTCTGAAACTCTTGCTGCCAATGATTGTTTGGATATTTGCATCAACATTTACGTCAAGGTTAGATACAGAAGAGCAGCTTCAGCGTTGATGCGGCTCAATCCAGTATATCTCAAAACTTACACTCCAGAAGAAATTGACAAAATGGAGTGGGAAAAATTGGAGACAGCAATTACTCTATGGATTGAACATTTCAAGGTCGCAGCAACGAGCGTATTGGTTTCTGAGAAGAAACTCTGTAACCAGGTTTTAGGCTCAATCATGGACGGACTGATGTGGCCTGAATGTTTCGTCAAGATCGCAGACAAAATCATGACCGTCTTCTTCCGGTTTGGGGAAGGCGTCGCCAGAAGCACCAAAGAGCCGCAGAAACTGTTCAAGCTCTTGGACATGTTCGACTCCATGGAAAAACTCAACTCCGAATTCTCTGAGGCATTTGGCGGCGAAGCCGGCACCGAAATCCGTACTCGATACAGAGAGCTCGAGAAGCTACTCGTGCACGCGTCCAGCAAAGTTTTTTGGGACTTCGGTCTCCAAATCGAGGGCAATTCAGACGGATTTCCTCCTCCAAAAGACGGATCGGTTCCGAAACTAGTCCGATACGCCGTCAACTACCTCAAGTACCTTGCAAGCGACAACTACAGTTCCGCCATGGCTAAAGTTCTCCAAATACAGAAATCATGGAAGGGCGGATTCCTCTCAAAATTGGAAGCCGAGGAGAATTTGCTCAAAGACGCCTTCTCCAACGTAATGGAAGCCCTACAAAGAAACGTCGAATCCAAAAAATCGCGCTATAGAGACAAAATCCTACCGCATATCTTCTCAATGAACACATACTGGTACATCTACATGCGGATCCGAAATACAGAACTAGGAAGATTGCTAGGAGAACAGTATATGAGAAAGAATTACAAAGCAGTAGCAGAGGAATCGGCTTACACTTACCAAATGCTATGTTGGGAGCCTCTGCTTTCGGTAATGGAAATGGAAGACATGCGATTACAGAACACGGAAACCGTGGAAGATTTAGCGAAAACGAAAATGGAAACATTCGTGAAGGCTTTGAGGGAATTTTCACAGAAACATAGAGCGGCGTATAGCATTCCAGATTTGGATTTGCGGGAGCAGTTGAAAGAGGCAACATTGAAGATGATACTCCCGGCTTATACGGAGTTTTTCAATTTGCACTCGGCTTTGTTGCCGGGGATTGGGAAGTATTATGTGGGCCTTGAGACGATCCATGATTTTGTGGGCCGGGCCTTTGAGTTCGAAGGTGGGAGTGGGCCTGGGTCGGGTGGCAAGTTGAAGCGACGGGGTTCGATGGATCGAATGGCTGAGATAGCGTCGGATGGACCAATCTTGGCCGTTGGATTGGAATAG 2313 46.52 MFATKRDGVMYVFMRIRNMELGRSFGLVLEGLPSTGSAYSQLLSMNLSDLGKSYISSRFWKLRQRVVTMAPKEEEDSRIQKLESACSDLKILLQASTELNESLEKMEKNLDSIDESLTTASRSIIPLQSLAMTTKALETRINRAASPALSLLDTFKRSEFLQRKILAIFANLSVEKSPEERLKKLIKLVNCVDRLNASISVISQEGESVIQKLQEVVEFLSRTKAADPQRTHRLKETMITLKALYETEIDDMKFEGLLDEALLNLQDEFENILKNLKHQRKPKFEDGEREKEGEAVGPEMGSELEIEAAKRISETLAANDCLDICINIYVKVRYRRAASALMRLNPVYLKTYTPEEIDKMEWEKLETAITLWIEHFKVAATSVLVSEKKLCNQVLGSIMDGLMWPECFVKIADKIMTVFFRFGEGVARSTKEPQKLFKLLDMFDSMEKLNSEFSEAFGGEAGTEIRTRYRELEKLLVHASSKVFWDFGLQIEGNSDGFPPPKDGSVPKLVRYAVNYLKYLASDNYSSAMAKVLQIQKSWKGGFLSKLEAEENLLKDAFSNVMEALQRNVESKKSRYRDKILPHIFSMNTYWYIYMRIRNTELGRLLGEQYMRKNYKAVAEESAYTYQMLCWEPLLSVMEMEDMRLQNTETVEDLAKTKMETFVKALREFSQKHRAAYSIPDLDLREQLKEATLKMILPAYTEFFNLHSALLPGIGKYYVGLETIHDFVGRAFEFEGGSGPGSGGKLKRRGSMDRMAEIASDGPILAVGLE 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23364258 23367319 - Lsi08G015340.1 Lsi08g01534 669460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01534 770 Pfam Exo70 exocyst complex subunit 372 709 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi08g01534 770 Coils Coil 547 575 - -
Lsi08g01534 770 SUPERFAMILY Cullin repeat-like 232 717 IPR016159 -
Lsi08g01534 770 Coils Coil 72 123 - -
Lsi08g01534 770 Gene3D Exocyst complex component Exo70 229 733 - -
Lsi08g01534 770 PANTHER OS08G0519900 PROTEIN 76 733 - -
Lsi08g01534 770 PANTHER EXOCYST COMPLEX PROTEIN EXO70 76 733 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01534 - - - csv:101222567 1316.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01120 Lsi-Chr8:19849929 Lsi08g01534 Lsi-Chr8:23364258 1.03E-73 dispersed
Lsi08g01534 Lsi-Chr8:23364258 Lsi01g01185 Lsi-Chr1:10070994 7.44E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g641 . . . . . . . . Cmo05g00136 . . . . . Sed11g0918 . . Bhi04g00438 Tan02g1722 Cmetu03g1922 . . . Lcy13g2139 Cla08g01629 Cam08g2133 Cec08g1718 Cco08g1840 Clacu08g1819 . Cre08g1602 . . Cone17ag0891 Cone20ag0237 . . . Cme03g02110 . . . . . . . . . . . . Cma05g00132 Car05g00114 . . . . . . . . . . . . . . . . . Lsi08g01534 Csa02g01886 Chy03g01600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31