Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01538 ATGGAGGACGCCTACGCCAGATCTATCACTGAGGTCTTGGATTTCTTTGGGGTTGACCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAACGCAGCAGTAGGGGTGATTACGGAAACGAATGCTGAAAAGGCTCTTGTGGAACTACGAGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGTTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAATCCACAAGAACAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGTAGGGCACGTGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACAATTGAAAAAGAAGCTCGATGAATTTGGTACCTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTCCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCTATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCGGCCATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTGTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACGACTTTCTGAGTACAATGTCAGCGGTACAACATATGCTCCTGATGGTATGATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGATCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGAAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGCCTTCCAGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAAAAACCAGTCACATGTCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGCATCCTTTGTAATGAAGATGGTTCCACCAGTGTCTTAACTTCTAGCATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGATGCCTGGCTATAGCATTCAAATTGCTTCCTTTGAGTCAGCAGAGTTTATCCGTTGACGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTTTGTCAAAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACTGGTCATTCTTATACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCGCTCTTCACCAGGGTTGAACCTTCTCATAAGAGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATTGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATTTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGCTTATAGTTATATCCTTCACTTCATGTTCATCTTCTTTACTGCTTATGCTGTTGGGTCAATGATTTCTTGGTTGTATGACAGGTACTCTAGTCCAATCGATTTGATCTTGCAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGCCTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCGGAAAGTGGTCCTAAGCTAAATTACACTGAGTTGATGAATTTTGATACTTGCTCAACCAGAGAGACAACATACTCTTGCAGTATCTTTGAGGATCGGCATCCATCAACTGTGTCTATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCTTAACCATGATCCTTCACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCGCTGTAACGCCATTATCTTGGGCTGAATGGACGATGGTTTTGTATCTTTCATTTCCTGTTATAATCATTGATGAGGTACTTAAGTGCTTTTCGCGACGCTCTAGTGGCACTGGCATGTCTATGATTAGTGAAAGTGATAATCCCCAACCCTATTCTGTTAAACTCTATTATGATGCAGTAATAGGATCAGTTCCTGTCTAA 3147 42.1 MEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTRTANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTQLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPRLSEYNVSGTTYAPDGMIFDSTGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRDRKMMSILCSKNQSHVLFSKGAPESIISRCSSILCNEDGSTSVLTSSIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSVDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCQKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKAYSYILHFMFIFFTAYAVGSMISWLYDRYSSPIDLILQVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSESGPKLNYTELMNFDTCSTRETTYSCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVQPLAVLFAVTPLSWAEWTMVLYLSFPVIIIDEVLKCFSRRSSGTGMSMISESDNPQPYSVKLYYDAVIGSVPV 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23393219 23416876 + Lsi08G015380.1 Lsi08g01538 669464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01538 1048 Gene3D - 342 735 IPR023214 -
Lsi08g01538 1048 Gene3D - 22 237 - -
Lsi08g01538 1048 SUPERFAMILY HAD-like 578 739 IPR036412 -
Lsi08g01538 1048 SFLD C1.7: P-type atpase like 326 743 - -
Lsi08g01538 1048 CDD P-type_ATPase_SERCA 5 1014 - -
Lsi08g01538 1048 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Lsi08g01538 1048 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01538 1048 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01538 1048 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01538 1048 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 834 IPR005782 GO:0005388|GO:0006816|GO:0016021
Lsi08g01538 1048 Gene3D - 850 1018 - -
Lsi08g01538 1048 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Lsi08g01538 1048 PANTHER CALCIUM-TRANSPORTING ATPASE 853 1026 - -
Lsi08g01538 1048 Gene3D - 355 592 IPR023299 GO:0000166
Lsi08g01538 1048 Pfam Cation transporter/ATPase, N-terminus 6 72 IPR004014 -
Lsi08g01538 1048 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Lsi08g01538 1048 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 779 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01538 1048 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 366 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01538 1048 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 853 1026 - -
Lsi08g01538 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 837 IPR023298 -
Lsi08g01538 1048 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Lsi08g01538 1048 SFLD p-type atpase 326 743 IPR044492 -
Lsi08g01538 1048 Pfam E1-E2 ATPase 122 324 - -
Lsi08g01538 1048 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Lsi08g01538 1048 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Lsi08g01538 1048 Pfam Cation transporting ATPase, C-terminus 853 1012 IPR006068 -
Lsi08g01538 1048 Pfam Cation transporting ATPase, C-terminus 775 835 IPR006068 -
Lsi08g01538 1048 Gene3D - 55 836 - -
Lsi08g01538 1048 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 2 834 - -
Lsi08g01538 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 852 1016 IPR023298 -
Lsi08g01538 1048 PANTHER CALCIUM-TRANSPORTING ATPASE 2 834 - -
Lsi08g01538 1048 Pfam Cation transport ATPase (P-type) 415 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01538 Lsi-Chr8:23393219 Lsi11g00805 Lsi-Chr11:9824443 7.58E-83 dispersed
Lsi02g01380 Lsi-Chr2:18820589 Lsi08g01538 Lsi-Chr8:23393219 0 transposed
Lsi01g00892 Lsi-Chr1:7182041 Lsi08g01538 Lsi-Chr8:23393219 1.05E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01538 K05853 - csv:101211345 1843.17