Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01540 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGAATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGTGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTCGAGCCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTGAAATGGTTCTCTTTGGGGCATTTAACTTGTCCCACAACAATGCAAGAACTTTGGGATGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAGAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGCGTCGCTCTAATCTCTTCTCTCTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGGATCCTCGTGAATTTGGATCTCGATTCAGAGCTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAATGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACTCAAATGGTGTAACCGCCGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAATCAATCAGGAAGCAACTCGTTAGCATCGGCGCCGTCGAGAAACTCGGCGGCGCTCTCTCTAACTTAAACTCCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTAAATTTGCGTTATCGATTTTATGGGCGGTGTTCAAGCTAGCTCCGGAGGAATGTGCGGTGCTTGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAAATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCGGACTCTATCTTCATTTCTAAATTGAAGATGGCGAGACTGAAACAAGCTAAAGAAGAAGCTGAAAGGGAAGTGGCGCATTATCGTGCTCACTTGGAGGCTGAATATCAGAAGAAAGTTTCTGAGTCAAGTTCTGGGTCCTATACACAACGGCTGGAAGAGGAAACCAAGGTTAAGATCGAGAATTTGAAGGAAGCAGCCGCAAGAGTTTCACAGGATGTTGTTCATATGCTTCTCCAATATGTTGCATCTGCCAGAACTTAG 1578 47.4 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRHSNGVTAGLSLLRTLCSNESIRKQLVSIGAVEKLGGALSNLNSDCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTKFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNPELKQKSAELLKLCSLNYPDSIFISKLKMARLKQAKEEAEREVAHYRAHLEAEYQKKVSESSSGSYTQRLEEETKVKIENLKEAAARVSQDVVHMLLQYVASART 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23426756 23433106 + Lsi08G015400.1 Lsi08g01540 669466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01540 525 PANTHER WDSAM1 PROTEIN 41 453 IPR045185 GO:0061630
Lsi08g01540 525 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Lsi08g01540 525 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Lsi08g01540 525 Gene3D - 444 525 - -
Lsi08g01540 525 SUPERFAMILY RING/U-box 66 140 - -
Lsi08g01540 525 SUPERFAMILY ARM repeat 159 440 IPR016024 -
Lsi08g01540 525 Pfam Vacuolar (H+)-ATPase G subunit 446 522 IPR005124 GO:0016471|GO:0046961|GO:1902600
Lsi08g01540 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 150 IPR013083 -
Lsi08g01540 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 453 - -
Lsi08g01540 525 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Lsi08g01540 525 Gene3D - 151 433 IPR011989 -
Lsi08g01540 525 Coils Coil 491 511 - -
Lsi08g01540 525 Coils Coil 442 476 - -
Lsi08g01540 525 CDD RING-Ubox_PUB 74 116 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01467 Lsi08g01540 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01540 Lsi-Chr8:23426756 Lsi04g00991 Lsi-Chr4:10800605 1.21E-30 dispersed
Lsi10g00025 Lsi-Chr10:424531 Lsi08g01540 Lsi-Chr8:23426756 3.12E-07 dispersed
Lsi04g01467 Lsi-Chr4:22395626 Lsi08g01540 Lsi-Chr8:23426756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01540 - - csv:101211594 805.053