Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01544 AATCCCGCTCAGAGCAGCCCTAGATCAGAGAAGGAGAAAGTTCAGTGGCAGATAGAGCTCGATATGGAGAAAATATGCGTTGCTGTTCGATTGAGGCCATCTGTATCTGAAGATTCAGTCCATGGAACCTATTGGAAGATTGACGACAATCGGATTTCGCTTCACAGACCTCACGGCACGCCAATCTCCGGCAATTCCTATGCTTTTGATCATGTTTTGGATGAAAGCTGCACCAACGGAAGTGTTTACGAACTTGTTGTTAAGGATATCATTCATGCTGCAGTTGAAGGTTTTAATGGTATGACTAGCAGTGGTAAAACTTTCACCATGAATGGTTCTGAAAGTGACGCCGGGGTTATTCATAGAGCAGTAAAAGACGTGTTTGAAAAAATCCACATGGTAAACTCTTGTTTGGGTCTTGAAGTCAATATGAAATCCTTAAAGTTGCAAGACAAAACTTTTAACTCCACCTTTTTGTTGTGTTATCAGACGTCAGATCGAGAATTTCTTACTAGAGTTTCCTACATGGAAATTTATAACGAAGAAATTAATGATCTATTTGCTGTTGAGAACAATAAATTGCCAATTCATGAGAGCCTGGAGCGTGGGATATTTGTTGCAGGTCTCAAGGAGGAAATTGTCAGTAGTGCTGATCAAGTTTTAAAGCTCATCAAGCAGGGCGAAGTAAATAAACATTTTGGTGAAACAAATATGAATGCTAGAAGTAGTAGGTCGCACACAATATTCAGAATGGTAATTGAAAGCAAGGGGAAGGACATTGGTGATAATTTGAGTGCTGATTCGATACGTGTTTCTGTATTGAATTTGGTAGACCTAGCTGGGTCTGAGCGTATTGCTAAAACTGGAGCTGAAGGAGCACGTTTGAAAGAAGGCAAGCATATCAATAAGAGTTTAATGATTCTTGGAAATGTTATTAATAAGCTAAGCGAGGGGGTTAGGCAGAGGGGACACATTCCCTATCGAGACAGTAAGCTAACGCGCATACTCCAACCAGCTCTAGGTGGGAATGCTAAGACTTCAATAATATGCACCATAGCTCCAGAAGAGTGCATAATGGTTTTCAGAATTTCAAACACACACATGTACATATCTGCAACATACCATTTCACAGTACATATAGAAGAAACTAAAGGAACTCTCCATTTTGCTAGCAGAGCAAAGCGCATCACCAATTGTGTTCAAGTGAATGAGATTTTGACGGATGCAGCACTATTAAAGCGTCAGAATCAAGAGATAGAGGAATTGCGTAAAAAACTTCAGTTCGAACTTGAACGTGAAAAGTTGCAAATGGAACTTGAAGAGGAGAGGAACTCACACAAAGAACGTGATCAACGTATCAGGGAGCAACAAATGAAAATAGAAAGTCTCAATAATCTTGTTAATCTTTCGGAGTCTGCACAAAACTCCAATCAAAGTCGAGAACAAGATTCTGTGAAAAACACTCTAAGGGAAGATTTTAGTGGCAGTTGTAATAAAAGCCATGAAGATGGATTCGTAACACCTTGTTTCAAGGCACCTCCTAATGCTTTTGTTGCCAAGCGATCTGATTACTCTATGCCTCCTGAGTTTAGCCCTCTTCCAGATGCTTTCAGCAATGTTGCAGATGAGGATGCTTGGTTGAAATTGAATAAAGGTTATGTAGTGGACCTTGATTCACTTCAAACGACTCCTGCAAGAAAAGTGCAATCGTTTCCATTCAATGAAATAACTCCTGGTCAGAGTCTCTCCAATGAGAACCATAAACAAGAAATTCAAAATCTTGAGAGACAACTGGAGCATGCCATCATGGAGAAAAATAAACTTCAGGAAAAGCATGAGGAGCAAATTCTTGTCAACGAGAAATTGATGGCAGAGATATCAGAGCTTCAACAAGAAGCACGAATAATCAGGGAACTTCCACAAAAGATGTCCAATTCTTTGGCAATGTGCAAAGATGTTTACATGGAAATCCTATCTTCCTTGAAGATTGCCGTAGATGACGAGAAGCCCTCAACTATGAAATTTCTGTCAACCACCAGTGAAATTGGAACATGCCTTTTTACTACTCTAGAGGTTCATTTAAATGCTGCCCTGAATTGGCAGAGTTATCTAGCGGTGAATGATTCACTTATTGAAGAACAAGATCGACTTCGAACAAGCATGAATAGCATAATGGAATCTCTTGTGTTATCAGAAACATCAATAGTTGGTAATGAGCAAACGTTGGATCCCTTGAGCCCTCATCAGTGTAAGGGATGTGCTGAAGACGACATTTGGAAGGAAAGTTTGAGTACTGAACTTGATGATGTTAGGAAAAGATGTCATGACCTCGAGAAGGAGCTAGTATCCAACAACCAACGTTCAGAGTTATCCAAGCAACAATATGACAACTTAGAAAGAGAATTCAAGCTTATGAAAGATGAAAGAGACACTTTGCGTAAAATGGTGTCTGAATCTGTTCAGAAACTAGAGTTAGAGAAGGAGCAGAAAGATACTGCATTAAAGGAACTGAACACTGAAGTCCAAAGACGAAAAGATCTAGGGGAAGGGATTAAGCGATTCAGCGCAGCATTTGCCTCTCGACACAGGTCATTCATGTCATTCAACAATGAGCTAATGTCCAAAACTGAGGAACTGAAGACCCATAATCGGGCTGTTGTTCCTATTCCTGTTCCCAAATCTCTTGGGGATTGA 2694 40.13 NPAQSSPRSEKEKVQWQIELDMEKICVAVRLRPSVSEDSVHGTYWKIDDNRISLHRPHGTPISGNSYAFDHVLDESCTNGSVYELVVKDIIHAAVEGFNGMTSSGKTFTMNGSESDAGVIHRAVKDVFEKIHMVNSCLGLEVNMKSLKLQDKTFNSTFLLCYQTSDREFLTRVSYMEIYNEEINDLFAVENNKLPIHESLERGIFVAGLKEEIVSSADQVLKLIKQGEVNKHFGETNMNARSSRSHTIFRMVIESKGKDIGDNLSADSIRVSVLNLVDLAGSERIAKTGAEGARLKEGKHINKSLMILGNVINKLSEGVRQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEECIMVFRISNTHMYISATYHFTVHIEETKGTLHFASRAKRITNCVQVNEILTDAALLKRQNQEIEELRKKLQFELEREKLQMELEEERNSHKERDQRIREQQMKIESLNNLVNLSESAQNSNQSREQDSVKNTLREDFSGSCNKSHEDGFVTPCFKAPPNAFVAKRSDYSMPPEFSPLPDAFSNVADEDAWLKLNKGYVVDLDSLQTTPARKVQSFPFNEITPGQSLSNENHKQEIQNLERQLEHAIMEKNKLQEKHEEQILVNEKLMAEISELQQEARIIRELPQKMSNSLAMCKDVYMEILSSLKIAVDDEKPSTMKFLSTTSEIGTCLFTTLEVHLNAALNWQSYLAVNDSLIEEQDRLRTSMNSIMESLVLSETSIVGNEQTLDPLSPHQCKGCAEDDIWKESLSTELDDVRKRCHDLEKELVSNNQRSELSKQQYDNLEREFKLMKDERDTLRKMVSESVQKLELEKEQKDTALKELNTEVQRRKDLGEGIKRFSAAFASRHRSFMSFNNELMSKTEELKTHNRAVVPIPVPKSLGD 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23464377 23470820 + Lsi08G015440.1 Lsi08g01544 669470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01544 897 PRINTS Kinesin heavy chain signature 325 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 PRINTS Kinesin heavy chain signature 91 112 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 PRINTS Kinesin heavy chain signature 236 253 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 PRINTS Kinesin heavy chain signature 273 291 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 Coils Coil 402 456 - -
Lsi08g01544 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 428 IPR027417 -
Lsi08g01544 897 Pfam Kinesin motor domain 50 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 Coils Coil 820 840 - -
Lsi08g01544 897 PANTHER CENTROMERE PROTEIN E 365 875 - -
Lsi08g01544 897 ProSiteProfiles Kinesin motor domain profile. 24 396 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 Coils Coil 760 815 - -
Lsi08g01544 897 PANTHER CENTROMERE PROTEIN E 23 357 - -
Lsi08g01544 897 CDD KISc_CENP_E 24 396 - -
Lsi08g01544 897 PANTHER CENTROMERE PROTEIN E 365 875 - -
Lsi08g01544 897 ProSitePatterns Kinesin motor domain signature. 272 283 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi08g01544 897 PANTHER CENTROMERE PROTEIN E 23 357 - -
Lsi08g01544 897 Coils Coil 584 639 - -
Lsi08g01544 897 SMART kinesin_4 22 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01544 897 Gene3D Kinesin motor domain 17 428 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01544 K11498 CENPE; centromeric protein E - csv:101212317 1331.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01604 Lsi-Chr3:27080381 Lsi08g01544 Lsi-Chr8:23464377 3.08E-115 dispersed
Lsi08g01544 Lsi-Chr8:23464377 Lsi11g01135 Lsi-Chr11:19823003 3.47E-72 dispersed
Lsi08g01544 Lsi-Chr8:23464377 Lsi10g00409 Lsi-Chr10:6214377 2.43E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28