Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01550 ATGGGTGGTTCTACTTCTGGCTTTCAATGTGAAATAATGAACTGTTCTTTTGGAGTTAGCAGTAGTCCTCAGCCATTGATTGGATCAGCTGACACTTCCTTTTCATCTACTTTTGAATCATCTACAACAACTCCTCTCTGTGAATTATCCACCTCTTTAGAGAATGAGGGAGTGAAAACCATATCCCGCCTTCTTCATGATCCTTCAACTTTGAGTTTAGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTCTAACTGAAGGTGATCACAGCCAGATCGCTAATATCAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGAAGAAGAAACAGTCTCACCGAAGAACGATGCGAAGACTCGGCTCGATTGCGTTAATGAAAATCGAAGAAAATTGGTTCTTGGTTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAACTTGAATGTGGAAACAACTGAGATTCTTAATAAAGATGACAAAACACTGCAAGTTGAGCATAGAATGAGTGCAAACTTTAACACCAAATCAGATGGTAAACAAGCCAAAGGAGGCTCTCAAAGTGTACAAGCTCCCAAGGAGAATTATATTCGGGTTCAAGCGCGACGGGGTCGAGCTACTAGTAGCCATAGCCTCGCAGAAAGGGTTAGGAGGGAAAAGATCAGTGAACGAATGAAGTTGCTGCAAGAGCTTGTTCCTGGATGCAATCAGATTACCGGGAAAACTGTGGTGCTCGACGAAATTATTAACTATGTACAATCACTGCAACAACAGGTTGAGTTTCTATCGATGAAACTCGCAACTGTCAGTCCAGAATCAAGCATGGATACAGAGAAAATTCTGCTCACAAATAACTCATACATTTCGTCATCGAATATTCTTCGTACACGAGACGAAGGCGTCAACAGCGTTCTTGCTATCAATCCTAGATTAACATCTCACACTACTCCTCATGTCATGTTTCAACTTCATGGAACAATACCAACCATGCCAAAAGCTACATCTCAGCAACTTTCTAGCCTTTCCAAAATGAAACGATAA 1062 41.05 MGGSTSGFQCEIMNCSFGVSSSPQPLIGSADTSFSSTFESSTTTPLCELSTSLENEGVKTISRLLHDPSTLSLDMFGSGNFSEMVGSFGFLTEGDHSQIANIKCPFSYVPNLDEEETVSPKNDAKTRLDCVNENRRKLVLGSNSSSPNKNAEDNLNVETTEILNKDDKTLQVEHRMSANFNTKSDGKQAKGGSQSVQAPKENYIRVQARRGRATSSHSLAERVRREKISERMKLLQELVPGCNQITGKTVVLDEIINYVQSLQQQVEFLSMKLATVSPESSMDTEKILLTNNSYISSSNILRTRDEGVNSVLAINPRLTSHTTPHVMFQLHGTIPTMPKATSQQLSSLSKMKR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23556410 23558472 + Lsi08G015500.1 Lsi08g01550 669476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01550 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 278 IPR036638 GO:0046983
Lsi08g01550 353 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 39 344 - -
Lsi08g01550 353 CDD bHLH_AtBPE_like 202 287 - -
Lsi08g01550 353 Gene3D - 209 284 IPR036638 GO:0046983
Lsi08g01550 353 SMART finulus 218 268 IPR011598 GO:0046983
Lsi08g01550 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Lsi08g01550 353 Pfam Helix-loop-helix DNA-binding domain 215 263 IPR011598 GO:0046983
Lsi08g01550 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 344 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01455 Lsi08g01550 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01550 Lsi-Chr8:23556410 Lsi09g00778 Lsi-Chr9:8827021 3.18E-43 dispersed
Lsi04g01455 Lsi-Chr4:22304152 Lsi08g01550 Lsi-Chr8:23556410 2.00E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25836 PF00010 HLH 5.60E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01550 - - bhj:120075945 568.54