Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01551 ATGGCTCCTTGGTGGGGAAGAGAAAGCCACAAAGGAACCCCTGTTGTTGTAAAGATGGAAAATCCCAACTGGTCAATAGTCGAAGTTGAAAGTCCTTCCGATGATGACTTCATCATCGGCGCCGAGTCGCCACCGGGTGGAGCCCGAGACAAGGGACGAGGCAAAAATGCCAAACAGCTCACTTGGGTTCTTCTTCTTAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGGTCAACATCGTCGCCGCCGTTAAACGCCGTCTTGCTTCTGGAAGAACCGACGCCGACGCTGACAATGACAACGCCGACGGCGGAGTGGGGGAGAACCCAACTGTCAAAACCAGGTTCTATTTATTTATTAAGGTTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGGTGGCGGCATATTACAAAGGTTGGCATTTTAAGGCAGCCCATCTTCAATTGGACTACTTATGGACAACCCCATTTGGGGTAAAGGATGTTTTTGACTGGTTTTATTCGAAATGGGTTTTGATTCGGGTTGCATATTTTGCTCCTCCTCTACAGTTTTTAGCCAATGTTTGTATAGTGTTGTTCCTTATTCAGACTTTGGATAGGCTTATTCTTTGTTTGGGTTGTTTCTGGATCCGATTCAAGAAAATCAAACCTGTTCCTAAGGTTGCTGCTTTGGATCTTGAGTCTGGAGAGAGTGGCTACTTCCCTATGGTTCTTGTTCAAATCCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTTGATGACTCGGATGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTATATAAATGGCAGCAACTCGATGCCAACATTGAATACCGACATCGGGTGATCCGAGAGGGCTATAAGGCTGGCAATCTCAAGTCTGCCATGAATTGCAGCTCTGTCAAAGACTATGAGTTTGTTGCAATCTTTGATGCTGATTTTCAGCCTGCCTCTGATTTCCTTAAAAGAACTGTTCCTCATTTTAAGGATAATGAGGAACTCGGACTAGTTCAAGCACGATGGTCGTTCGTGAACAAAGACGAGAACTTGTTAACCAGACTGCAGAACATTAACCTAGCCTTCCATTTTGAAGTAGAGCAACAAGTGAATGGCGTGTTTCTCAATTTCTTTGGATTCAATGGTACTGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGTAGCCGGTGGCTGGTTGGAGAGGACCACTGTTGAGGATATGGACATTGCCGTTCGTGCTCATCTTCATGGTTGGAAATTCATTTTCCTCAATGACGTAGAGTGTCAATGTGAATTACCAGAATCGTATGAAGCATATAGAAAACAACAGCACAGATGGCATTCGGGACCGATGCAACTGTTTCGACTTTGTTTGCCTGACATAGTTCGATCAAAGATTGGCATATCAAAGAAATTCAATTTGATCTTCCTCTTCTTTCTCTTACGAAAGCTGATATTGCCATTTTATTCATTTACCCTTTTCTGCATAATTCTCCCAATGACGATGTTCGTTCCTGAAGCTGAGTTACCGGCCTGGGTTGTATGTTACATTCCAGCTACCATGTCCTTTCTCAACATCCTTCCAGCACCAAAATTCTTTCCCTTCATTGTCCCTTACCTCCTCTTTGAGAACACAATGTCAGTAACTAAGTTTACCGCAATGGTCTCAGGACTCTTCCAGCTAGGTAGTGCATATGAGTGGGTTGTTACGAAGAAATCAGGCCGCTCGTCTGAGGGTGATCTTGCCTCAATTGTTGAGAAGAAAAAGCTGAACACTGAAAAGAGTGTCTCAGTGAACAACCTTGAAGAGATTGAGTTAATCCAAAAACAGGACAAGAAGTTGCCAAGGAAGAAGCATAACAGAATATACATGAAGGAACTAGCACTGGCTTTCCTTCTTCTAACAGCCGCTGCTAGAAGCCTCCTCTCAGCTCAAGGAATTCATTTCTACTTCTTGCTGTTTCAGGGAATATCCTTCCTCCTTGTCGGTCTAGATTTGATCGGCGAGCAGGTTGTTTGA 2103 44.32 MAPWWGRESHKGTPVVVKMENPNWSIVEVESPSDDDFIIGAESPPGGARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIVAAVKRRLASGRTDADADNDNADGGVGENPTVKTRFYLFIKVFLWLSVLLLGFEVAAYYKGWHFKAAHLQLDYLWTTPFGVKDVFDWFYSKWVLIRVAYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPKVAALDLESGESGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVYKWQQLDANIEYRHRVIREGYKAGNLKSAMNCSSVKDYEFVAIFDADFQPASDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEVAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFTAMVSGLFQLGSAYEWVVTKKSGRSSEGDLASIVEKKKLNTEKSVSVNNLEEIELIQKQDKKLPRKKHNRIYMKELALAFLLLTAAARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVV 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23560648 23564770 - Lsi08G015510.1 Lsi08g01551 669477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01551 700 Pfam Glycosyl transferase family group 2 336 542 IPR001173 -
Lsi08g01551 700 PANTHER - 8 699 - -
Lsi08g01551 700 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 8 699 - -
Lsi08g01551 700 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 459 IPR029044 -
Lsi08g01551 700 SUPERFAMILY Nucleotide-diphospho-sugar transferases 244 522 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01454 Lsi08g01551 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02204 Lsi-Chr4:29073775 Lsi08g01551 Lsi-Chr8:23560648 0 dispersed
Lsi08g01551 Lsi-Chr8:23560648 Lsi10g01196 Lsi-Chr10:16230217 6.06E-125 dispersed
Lsi04g01454 Lsi-Chr4:22296233 Lsi08g01551 Lsi-Chr8:23560648 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01551 - - csv:101203245 1309.28