Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01553 ATGACCGACGACAATGGAAAACCGGATAAGGGTAATCAATGGCAATCGCCAAGACCACCGCACCAAGAGAAAGCGGAGGACATGAAACTCTGGGGAATTCTTCTTTTCGGTCTGATCGGTGCCTCTGCCACCACTCTTGCCTTTCTCTTCTTGAAGTTACTGCTTAATCGACTAGCTGCTGGATTACCCAATTTGACATTGGTTGTTTTGGGGCAGGTTGGTCAGCTGCGGAGAACTGTTGATTGGGTATACACTCAGGTATATGCGTCACAATCATCATGGGGTGGAGGAAGTGGCCGTTCTTTCCGGTCATCATTTCAGGAGGAAGCATGGAAAAGGTATAATCGTAGACTGCAAGAGGAATATGAAGAAGAAATGGAGAGGGTGGAGCGCATAAGGCGCATGCAGAGTGTATTCAACAGAGAGAGGAACAAATACAAGAGAGGCTATGAAAGCTGGAGAGAGAATGGTCCTGGTGCGTATCATCAGCATCACCAGCGAGATGATTGGTATTGGAAGGCCGAGACATTCTACAGAGAGCAAAGTAACACTAATAATTATAGGGAAACTCCAAGAGACAGACCAAGTTACTTGTTATCACATCATTATACAGTTTTGGGTCTCAACAGGATTAAACCTACAAATTGGGTTTCATTTCATCTGGCACTATTCCTCCTTTCTATGTGTCGGAAAACACCTTATACAGATGCTGAGATTAAGGTATATTCCTTAATTACAGCATTCCAATCCAAGGCGAAGCAGTTTCATCCAGATCAGAACCAGGATAATAAAGGTAGAACCATAGAAGATGATCAAGCTGCTGAGGCCAAGTTCAAAGAGGTGATGACATCTTATGAGGCCATAAAGTCAGAAAGAAAGAACAGTAGAGCATAA 894 43.85 MTDDNGKPDKGNQWQSPRPPHQEKAEDMKLWGILLFGLIGASATTLAFLFLKLLLNRLAAGLPNLTLVVLGQVGQLRRTVDWVYTQVYASQSSWGGGSGRSFRSSFQEEAWKRYNRRLQEEYEEEMERVERIRRMQSVFNRERNKYKRGYESWRENGPGAYHQHHQRDDWYWKAETFYREQSNTNNYRETPRDRPSYLLSHHYTVLGLNRIKPTNWVSFHLALFLLSMCRKTPYTDAEIKVYSLITAFQSKAKQFHPDQNQDNKGRTIEDDQAAEAKFKEVMTSYEAIKSERKNSRA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23585852 23589112 - Lsi08G015530.1 Lsi08g01553 669479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01553 297 PRINTS DnaJ domain signature 248 263 IPR001623 -
Lsi08g01553 297 PRINTS DnaJ domain signature 273 293 IPR001623 -
Lsi08g01553 297 Gene3D DnaJ domain 199 297 IPR036869 -
Lsi08g01553 297 ProSiteProfiles dnaJ domain profile. 201 297 IPR001623 -
Lsi08g01553 297 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 214 - -
Lsi08g01553 297 SUPERFAMILY Chaperone J-domain 244 294 IPR036869 -
Lsi08g01553 297 MobiDBLite consensus disorder prediction 1 22 - -
Lsi08g01553 297 Coils Coil 108 135 - -
Lsi08g01553 297 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 216 295 - -
Lsi08g01553 297 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 214 - -
Lsi08g01553 297 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 216 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01553 - - - csv:101213280 393.275
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37