Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01554 ATGGCAATCCATGATTCTCATGGTCAAGATTCTTCCTACTTTTTCGGATGGCAAGAGTATGAGAAGAACCCTTATCACCCTACTCAAAACCCCACTGGAATTATCCAAATGGGTCTCGCCGAAAACAAGCTATGTTATGACTTATTGGATGAGTGGATGGAGAACAACCCAGACGCTTTGGGATTGAGAAAAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTTAAAAAGGTGTTGGTTGAATTAATGGCGGAAATACGAGGAAAGAAAGTGAAATTTGATATGAATAAACTGGTCCTTACCGCTGGTGCAACTTCTGCAAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGTGAAGCTTTCCTTGTTCCCACTCCTTACTATCCTGGGTTTGACAGGGACTTAAAATGGCGTACAGGCGTACAAATAATTCCAATCCACTGTTCAAGTTCAAACGGTTTCCGAATCACAGCGGCGGCGATGGAAGAGGCCATGGAACGAGCCCAAAAGCTGAAATTACGAGTCAAAGGGATTTTAATTACGAACCCATCGAACCCATTGGGCACCACATTGAGCCGCAACGAGTTAAATTTAGTGGTGGATTTCGCCACAGCCAACGCAGTCCACATCGTGAGCGACGAAATATATTCCGCCACAGTTTTCTCGTCGCCAAATTTCCGAACTATCATGGACCAACGTCTACAAAACTCCCCAATTTGGGACCGCATCCACGTGGTGTACAGCCTGTCCAAGGATCTGGGCCTACCTGGGTTCCGCGTAGGCATGATTTATTCAAACGACCCCAAAGTAGTGGCTGCAGCTACCAAAATGTCGAGCTTTGGTTTAATTTCTTCTCAAACGCAATATTTGGTGTCACAAATTCTAGGAGATGCCAAATTCCGAGAGAATTACATGGAGGAAATGAAGACGAGGATCAGGAAAAGGAGAGGGATGTTGGAGTCGGGGCTCCGAAAGGCTGGAATCGGGTGTTTGAAAGGGAATGCGGGTCTGTTTTGTTGGGTGGATATGAGGCATCTTTTGAAATACCCAAGCTTCGAAGAGGAAAAGGTGGTTTGGAAGAGGATTTTGTGTGAGGTTGGGCTTAATGTCTCACCCGGTTCGGCTTGTCATTGCTCTGAACCGGGTTGGTTCAGAATGTGCTTTGCCAACATGTCGGAACACACTTTGAATGTGGCGATGCGTCGTCTTAAGGCATTTGTTGACTCTACCTCCTCTCTCAAAGGCCAACACAAGTCTGTTGTTGTTAAGAGAATGCCTTCCTTAACTAAGTGGTAA 1329 45.45 MAIHDSHGQDSSYFFGWQEYEKNPYHPTQNPTGIIQMGLAENKLCYDLLDEWMENNPDALGLRKNGVSVFRELALFQDYHGLPAFKKVLVELMAEIRGKKVKFDMNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRTGVQIIPIHCSSSNGFRITAAAMEEAMERAQKLKLRVKGILITNPSNPLGTTLSRNELNLVVDFATANAVHIVSDEIYSATVFSSPNFRTIMDQRLQNSPIWDRIHVVYSLSKDLGLPGFRVGMIYSNDPKVVAAATKMSSFGLISSQTQYLVSQILGDAKFRENYMEEMKTRIRKRRGMLESGLRKAGIGCLKGNAGLFCWVDMRHLLKYPSFEEEKVVWKRILCEVGLNVSPGSACHCSEPGWFRMCFANMSEHTLNVAMRRLKAFVDSTSSLKGQHKSVVVKRMPSLTKW 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23599220 23601497 - Lsi08G015540.1 Lsi08g01554 669480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01554 442 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 426 - -
Lsi08g01554 442 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 2 426 - -
Lsi08g01554 442 Gene3D Aspartate Aminotransferase, domain 1 23 413 IPR015422 GO:0003824
Lsi08g01554 442 CDD AAT_like 71 416 - -
Lsi08g01554 442 Gene3D - 57 308 IPR015421 GO:0003824
Lsi08g01554 442 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 259 272 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lsi08g01554 442 SUPERFAMILY PLP-dependent transferases 3 418 IPR015424 -
Lsi08g01554 442 Pfam Aminotransferase class I and II 35 414 IPR004839 GO:0009058|GO:0030170
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 277 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 207 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 37 63 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 219 242 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 70 86 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 129 150 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 107 127 - -
Lsi08g01554 442 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 285 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01554 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - csv:101213522 724.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00811 Lsi-Chr5:12439241 Lsi08g01554 Lsi-Chr8:23599220 0 dispersed
Lsi08g01554 Lsi-Chr8:23599220 Lsi09g01596 Lsi-Chr9:24086088 2.84E-169 dispersed
Lsi04g02378 Lsi-Chr4:30909850 Lsi08g01554 Lsi-Chr8:23599220 5.97E-15 transposed
Lsi01g00863 Lsi-Chr1:6938012 Lsi08g01554 Lsi-Chr8:23599220 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104