Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01559 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACAAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGATCCTCTTCTTCAAATGGGAATCAGCAGATCATGGCCGTAAATGCAAATCTCCCCTCCGGTGACTCTAATTATTTTCCACCCTCCGATCAAGTTGTCAAACTGGAGCCTCCTACCACTGCTTCACAATCTCAAATTCAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTCCAAATTAATAATAATAATAATAATATTAATAATAATAATAATAATGTTGATTCAATTAAAACCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAACGTTGGAGCTCCGCCGGAGGTGGCGGCGAAACTTACTTCGGTACGGGAGGAATTCGAGCAGCGGCGGCGATCTTCAATGGCGTCCACTGAGGGTTCATCAATTGACCCTGAACTTGATCAATTTATGGAAGCTTATTATGGGGTGTTGGTGAAGTATAGAGAGGAGCTAACAAGGCCAATTCAAGAAGCTGCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGAAGGGAAGAGCGAAGGAATGGGATCGTCGTCGTCGGAGGAAGAGAAGGGCGGGGAAGGAGAAAGAGAGATAGAAGAACAAATCGACCCACGAGCGGAAGAGCGAGAGCTTAAGAATCACTTACTAAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATACCCATCGGTAAATAAAACACTATTCATTATTCATTTCTTTTTGCACGCACACAAGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAAATAAATAATTGGTTTATAAACCAAAGGAAAAGGCACTGGAAGCCATCTGAAGATGTGCAGTTCATGGGTATGGAGGGGTTTTACCATCCCAATGCTGCTGCTGCTTTTTACTTTGATGGCCACTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 1191 42.23 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQQIMAVNANLPSGDSNYFPPSDQVVKLEPPTTASQSQIQVHDFHYHLMREFQINNNNNNINNNNNNVDSIKTKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGVLVKYREELTRPIQEAADFMHRIESQLNTLCNGSFQILASEGKSEGMGSSSSEEEKGGEGEREIEEQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSVNKTLFIIHFFLHAHKEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAFYFDGHFMGDSHYRLGP 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23652588 23658725 - Lsi08G015590.1 Lsi08g01559 669485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01559 396 Gene3D - 277 365 - -
Lsi08g01559 396 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Lsi08g01559 396 MobiDBLite consensus disorder prediction 232 257 - -
Lsi08g01559 396 ProSiteProfiles 'Homeobox' domain profile. 330 359 IPR001356 GO:0003677
Lsi08g01559 396 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
Lsi08g01559 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 387 - -
Lsi08g01559 396 MobiDBLite consensus disorder prediction 226 257 - -
Lsi08g01559 396 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 2 387 - -
Lsi08g01559 396 SMART HOX_1 282 363 IPR001356 GO:0003677
Lsi08g01559 396 Pfam KNOX2 domain 172 215 IPR005541 GO:0003677|GO:0005634
Lsi08g01559 396 SMART ELK_2 174 194 IPR005539 GO:0003677
Lsi08g01559 396 SMART ELK_2 260 281 IPR005539 GO:0003677
Lsi08g01559 396 Pfam KNOX1 domain 115 156 IPR005540 GO:0003677|GO:0005634
Lsi08g01559 396 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Lsi08g01559 396 Pfam ELK domain 260 281 IPR005539 GO:0003677
Lsi08g01559 396 SUPERFAMILY Homeodomain-like 281 369 IPR009057 -
Lsi08g01559 396 CDD homeodomain 292 360 IPR001356 GO:0003677
Lsi08g01559 396 Pfam Homeobox KN domain 300 355 IPR008422 GO:0003677|GO:0006355
Lsi08g01559 396 ProSitePatterns 'Homeobox' domain signature. 334 357 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01445 Lsi08g01559 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01559 Lsi-Chr8:23652588 Lsi11g01422 Lsi-Chr11:22788484 9.44E-72 dispersed
Lsi04g01445 Lsi-Chr4:22203808 Lsi08g01559 Lsi-Chr8:23652588 4.66E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01559 - - csv:101219997 544.658