Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01559 | ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACAAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGATCCTCTTCTTCAAATGGGAATCAGCAGATCATGGCCGTAAATGCAAATCTCCCCTCCGGTGACTCTAATTATTTTCCACCCTCCGATCAAGTTGTCAAACTGGAGCCTCCTACCACTGCTTCACAATCTCAAATTCAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTCCAAATTAATAATAATAATAATAATATTAATAATAATAATAATAATGTTGATTCAATTAAAACCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAACGTTGGAGCTCCGCCGGAGGTGGCGGCGAAACTTACTTCGGTACGGGAGGAATTCGAGCAGCGGCGGCGATCTTCAATGGCGTCCACTGAGGGTTCATCAATTGACCCTGAACTTGATCAATTTATGGAAGCTTATTATGGGGTGTTGGTGAAGTATAGAGAGGAGCTAACAAGGCCAATTCAAGAAGCTGCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGAAGGGAAGAGCGAAGGAATGGGATCGTCGTCGTCGGAGGAAGAGAAGGGCGGGGAAGGAGAAAGAGAGATAGAAGAACAAATCGACCCACGAGCGGAAGAGCGAGAGCTTAAGAATCACTTACTAAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATACCCATCGGTAAATAAAACACTATTCATTATTCATTTCTTTTTGCACGCACACAAGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAAATAAATAATTGGTTTATAAACCAAAGGAAAAGGCACTGGAAGCCATCTGAAGATGTGCAGTTCATGGGTATGGAGGGGTTTTACCATCCCAATGCTGCTGCTGCTTTTTACTTTGATGGCCACTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA | 1191 | 42.23 | MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQQIMAVNANLPSGDSNYFPPSDQVVKLEPPTTASQSQIQVHDFHYHLMREFQINNNNNNINNNNNNVDSIKTKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGVLVKYREELTRPIQEAADFMHRIESQLNTLCNGSFQILASEGKSEGMGSSSSEEEKGGEGEREIEEQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSVNKTLFIIHFFLHAHKEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAFYFDGHFMGDSHYRLGP | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23652588 | 23658725 | - | Lsi08G015590.1 | Lsi08g01559 | 669485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01559 | 396 | Gene3D | - | 277 | 365 | - | - | |
Lsi08g01559 | 396 | ProSiteProfiles | ELK domain profile. | 260 | 280 | IPR005539 | GO:0003677 | |
Lsi08g01559 | 396 | MobiDBLite | consensus disorder prediction | 232 | 257 | - | - | |
Lsi08g01559 | 396 | ProSiteProfiles | 'Homeobox' domain profile. | 330 | 359 | IPR001356 | GO:0003677 | |
Lsi08g01559 | 396 | SMART | KNOX2_2 | 165 | 216 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi08g01559 | 396 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 387 | - | - | |
Lsi08g01559 | 396 | MobiDBLite | consensus disorder prediction | 226 | 257 | - | - | |
Lsi08g01559 | 396 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 2 | 387 | - | - | |
Lsi08g01559 | 396 | SMART | HOX_1 | 282 | 363 | IPR001356 | GO:0003677 | |
Lsi08g01559 | 396 | Pfam | KNOX2 domain | 172 | 215 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi08g01559 | 396 | SMART | ELK_2 | 174 | 194 | IPR005539 | GO:0003677 | |
Lsi08g01559 | 396 | SMART | ELK_2 | 260 | 281 | IPR005539 | GO:0003677 | |
Lsi08g01559 | 396 | Pfam | KNOX1 domain | 115 | 156 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi08g01559 | 396 | SMART | KNOX1_2 | 113 | 157 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi08g01559 | 396 | Pfam | ELK domain | 260 | 281 | IPR005539 | GO:0003677 | |
Lsi08g01559 | 396 | SUPERFAMILY | Homeodomain-like | 281 | 369 | IPR009057 | - | |
Lsi08g01559 | 396 | CDD | homeodomain | 292 | 360 | IPR001356 | GO:0003677 | |
Lsi08g01559 | 396 | Pfam | Homeobox KN domain | 300 | 355 | IPR008422 | GO:0003677|GO:0006355 | |
Lsi08g01559 | 396 | ProSitePatterns | 'Homeobox' domain signature. | 334 | 357 | IPR017970 | GO:0000981|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01445 | Lsi08g01559 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01559 | Lsi-Chr8:23652588 | Lsi11g01422 | Lsi-Chr11:22788484 | 9.44E-72 | dispersed | |
Lsi04g01445 | Lsi-Chr4:22203808 | Lsi08g01559 | Lsi-Chr8:23652588 | 4.66E-107 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01559 | - | - | csv:101219997 | 544.658 |