Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01560 | ATGCTCACCGAATCAATGCTCCTCAATCCGACGGCCCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCCTATTTCACCGCCCCCCACGTGTCGCCACTCGATTCGCCCACGGCGGCGCTCATGGACTTTGATTCCTCCTTCTGGGAAGATCCAGACTTGCCGGCGGCTGTGGATGCCTTCTCGTGCGACCATTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCTCGTGGAAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGCGCTGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCCTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGTTGCCAGCGGCGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAACTCCGGATTCCGGGGAAACAGAGCCTCAGGTCTCCACGGGCGAGAGAAATCGCCGTCCCTTCTGTATCATCGCCGACGTCGATCCTAATATCGCCGTCGTCGGACTCGCCACCTATGTCTCCGATTAGCCCTGTAATTAGCGGCGGCGAATCATTCAGCAGATTAGTCGCATTGATGCACAGTCTCCACCTGGATGAATTAAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGACTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAGGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCTCGGAACTAA | 921 | 56.24 | MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLPAAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTNPAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 23679943 | 23680863 | + | Lsi08G015600.1 | Lsi08g01560 | 669486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01560 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 244 | IPR045234 | - | |
| Lsi08g01560 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872 | |
| Lsi08g01560 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872 | |
| Lsi08g01560 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872 | |
| Lsi08g01560 | 306 | Gene3D | - | 107 | 178 | - | - | |
| Lsi08g01560 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 251 | 302 | IPR045234 | - | |
| Lsi08g01560 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 244 | - | - | |
| Lsi08g01560 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 251 | 302 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01443 | Lsi08g01560 | CCT | |
| Lsi04g01443 | Lsi08g01560 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g01560 | Lsi-Chr8:23679943 | Lsi11g00204 | Lsi-Chr11:2077559 | 1.21E-72 | dispersed | |
| Lsi04g01443 | Lsi-Chr4:22158906 | Lsi08g01560 | Lsi-Chr8:23679943 | 1.20E-89 | wgd | |
| Lsi06g00248 | Lsi-Chr6:2788692 | Lsi08g01560 | Lsi-Chr8:23679943 | 4.00E-81 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01560 | - | - | csv:101214248 | 535.798 |