Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01564 ATGGCGAACACTCCTCCTTCTCACCAGACGTGTATTCCTCTGCCTTCGGACTCAGGTGAAAATCAGACCGATCCTGAAGCCAGCGCAACCTTGGTTCCTATACATATTGTTACTCATGTATCTCAACTGCCTAACGAATTTGTTGAACCATCACCTGAAAAGCCTCTGGTAGTTGGCTTTGATTGTGAAGGTGTTGATCTGTGTCGCCATGGAAACCTCTGTGTCATGCAGATTGCATTTCCAGATGCTGTATATCTGGTTGATGCTGTACAGGGAGGAGACGAACTTGTGAAAGTCTGTAAGCCTGCCCTTGAGTCCACATATGTCACAAAAGTTATTCATGATTGCAAACGAGATAGCGAGGCATTGTACTTTCAGTTTGGTATCAAGTTGAACAACGTTATTGATACACAGGACCCCAAGTTTTGGACCTACAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGATGATGTACGCTTTCTTCTTTACATCTATCACAAGATGATGGAGAAATTGAATCACCAATCGCTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATGCTGACTGGCCTCCTCTCCCTTCTGTTCCAGATGACCTTGTAGTAGAGGGCAATGCTCCTGAAGAAGAAATTCTTTCAGTCTTAGATGTTCCCCATGGAATGATGGGTCGCGTAATTGGTAGGAAGGGAGCCTCAATTTTGTCAATAAAGGAATCTTGCAATGCGGAAATTCTCATTGGCGGTGCTAAGGGCCCACCAGACAAGGTATTCATCATTGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCTATGCTAAGAGGAAGGATGCTTGAAATATGA 879 45.16 MANTPPSHQTCIPLPSDSGENQTDPEASATLVPIHIVTHVSQLPNEFVEPSPEKPLVVGFDCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGDELVKVCKPALESTYVTKVIHDCKRDSEALYFQFGIKLNNVIDTQDPKFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNHQSLWYLAVRGALYCRCFCISDNEYADWPPLPSVPDDLVVEGNAPEEEILSVLDVPHGMMGRVIGRKGASILSIKESCNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23700796 23708348 - Lsi08G015640.1 Lsi08g01564 669490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01564 292 CDD KH-I 228 285 - -
Lsi08g01564 292 SMART 35exoneu6 34 175 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lsi08g01564 292 PANTHER - 138 290 - -
Lsi08g01564 292 ProSiteProfiles Type-1 KH domain profile. 223 285 - -
Lsi08g01564 292 Pfam 3'-5' exonuclease 44 138 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lsi08g01564 292 PANTHER - 6 139 - -
Lsi08g01564 292 Gene3D - 141 190 IPR036397 GO:0003676
Lsi08g01564 292 SUPERFAMILY Ribonuclease H-like 29 199 IPR012337 -
Lsi08g01564 292 Gene3D K Homology domain, type 1 213 290 IPR036612 GO:0003723
Lsi08g01564 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 219 290 IPR036612 GO:0003723
Lsi08g01564 292 MobiDBLite consensus disorder prediction 1 26 - -
Lsi08g01564 292 Gene3D - 4 140 IPR036397 GO:0003676
Lsi08g01564 292 SMART kh_6 222 290 IPR004087 GO:0003676
Lsi08g01564 292 Pfam KH domain 228 286 IPR004088 GO:0003723
Lsi08g01564 292 PANTHER EGALITARIAN, ISOFORM B 138 290 - -
Lsi08g01564 292 PANTHER EGALITARIAN, ISOFORM B 6 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01564 K18740 EXD1, EGL; exonuclease 3'-5' domain-containing protein 1 - csv:101214970 551.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006700 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 38