Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01567 ATGGGGAAGAGATTCTCTTGCAATGGTTTGATGTTCAAAATGTTGGTTATGACATTGACAGTCTTAGTTTGTGGAGTTGTGGAGGGTGGTTCACTTTCTAAACAGAAGAGTTTGGAACTTGAGAAGAAAATGAACTTTCTTAGGAAACAAGCAACAAAAAGCATTCAGAGCGAAGATGGTGACATCATTGATTGCATTAACATCTACGACCAGCCTGCTTTTGATCATCCTGCCCTGAAGAATCACACCATCCAGATGGCACCCACTTTTGATCCCACCGTGGATAAACATTCAAAGAAAGCAACAGCAAAAAGGGAAGGGAAGGAGGAAAAGGATTCCATGGTTGTGAAACAAAGATGGAGGAAAAGTGGCAGTTGTCCTAAAGGAACAATACCAATTCGAAGGATCCGAAAACGTGTCCTACTCAAAGCTGATTCGATAGAACGCTATGGAAGAAAGAGACCGATGCCTTCGCTAGAAATCGCACAGCTTTCCAACAGCCGAAGTTCCCACTTTCTACTGAAGAATCATTCGAAGGCATTTCTGCTTGCTTTAGGAAACAACTACAATGCAGCAAAAGGAGACATTAAAGTATGCAACCCCAAGGTCGAATTTGATGATGAATACAGTACTTCCCAAGTGGCTCTATTAACCGGCCCTCACAATAGTTACGAGGCTGTCGAATCTGGATGGGCAGTAAATCCAGGTGTTTACGGGGATCGGCAGACTCGACTGTTCGTGTATTGGACTGTTGATGCTTCCCACAAAACAGGCTGCTTTGATCTCACTTGCCCTGGTTTTGTTCAAACAAGCAATGAAATTGCTCTTGGTTCTGCTATTTATCCAATCTCAACTCCAACTGGGCTTCCATATGAAATAACTATGTTCCTTTATAGAGATTTAAAGACAAATAATTGGTGGGTACAATATGGTGGAAGCATTAACATAGGTTATTGGCCTTCTGAGTTATTCAAAGCTCTAAAATTTACTGCAGAAACGGTACAATGGGGAGGGGAAGTTTACAGCACAAAGTTAGGAAGACCTCCTCACACTGGAACAGGTATGGGCAATGGAAGGTTTCCTGACTTCATTTCTGGTAATTCAGGTTGGGTAAAACAGATAAGGGTTCAAGACAACTCGATGATTTTGAAGTTTCCTAATTGGGTTGAGCACTACTCCGATGAATATGATTGTTACGATGTCGATTTTATCCGAGATTATTTAGAAGATCCCGAACTATACTATGGAGGTCCTGGTAAAAATCCAAAGTGCCCCTAA 1278 41.78 MGKRFSCNGLMFKMLVMTLTVLVCGVVEGGSLSKQKSLELEKKMNFLRKQATKSIQSEDGDIIDCINIYDQPAFDHPALKNHTIQMAPTFDPTVDKHSKKATAKREGKEEKDSMVVKQRWRKSGSCPKGTIPIRRIRKRVLLKADSIERYGRKRPMPSLEIAQLSNSRSSHFLLKNHSKAFLLALGNNYNAAKGDIKVCNPKVEFDDEYSTSQVALLTGPHNSYEAVESGWAVNPGVYGDRQTRLFVYWTVDASHKTGCFDLTCPGFVQTSNEIALGSAIYPISTPTGLPYEITMFLYRDLKTNNWWVQYGGSINIGYWPSELFKALKFTAETVQWGGEVYSTKLGRPPHTGTGMGNGRFPDFISGNSGWVKQIRVQDNSMILKFPNWVEHYSDEYDCYDVDFIRDYLEDPELYYGGPGKNPKCP 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23719457 23721735 - Lsi08G015670.1 Lsi08g01567 669493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01567 425 Pfam Neprosin activation peptide 54 162 IPR025521 -
Lsi08g01567 425 Pfam Neprosin 207 418 IPR004314 -
Lsi08g01567 425 PANTHER CARBOXYL-TERMINAL PEPTIDASE 49 423 - -
Lsi08g01567 425 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 49 423 - -
Lsi08g01567 425 MobiDBLite consensus disorder prediction 93 114 - -
Lsi08g01567 425 Gene3D - 175 313 - -
Lsi08g01567 425 MobiDBLite consensus disorder prediction 90 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01567 - - - csv:101203978 745.732
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01441 Lsi08g01567 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01442 Lsi-Chr4:22147122 Lsi08g01567 Lsi-Chr8:23719457 2.63E-70 dispersed
Lsi07g01207 Lsi-Chr7:17578837 Lsi08g01567 Lsi-Chr8:23719457 2.22E-17 dispersed
Lsi07g01208 Lsi-Chr7:17597433 Lsi08g01567 Lsi-Chr8:23719457 2.57E-10 dispersed
Lsi08g01567 Lsi-Chr8:23719457 Lsi10g00921 Lsi-Chr10:13681668 1.87E-81 dispersed
Lsi04g01441 Lsi-Chr4:22137808 Lsi08g01567 Lsi-Chr8:23719457 6.00E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g49 Blo01g01477 . . . . Bpe02g00477 . . Cmo05g00114 . . Cma05g00108 . . Sed08g1753 . . Bhi04g00486 Tan02g1660 Cmetu03g1286 . Hepe08g1375 . Lcy13g2171 Cla05g01813 Cam05g1937 Cec05g1950 Cco05g2011 Clacu05g1929 Cmu05g1811 Cre05g1937 Cone4ag1646 . Cone17ag0913 . Lsi04g01441 . . . . . . . . . . . . Cmo01g01758 . . . Car01g01365 Car05g00093 Cpe11g00088 Cpe02g00291 Bhi09g03178 . . . Hepe01g1862 Mch11g0397 . . . . . . . . Lsi08g01567 Csa02g01854 Chy03g01630 Cme07g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011410 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 31