Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01579 ATGTTGAAGCTATTATCCTCATCTCCCCGCATTTTCATCTTCATCTTCATCTTCCTCTGCTCTTTGCCGTTGCTTCCTTCCACCGCTCTTCCCATCTCCGACTCCGATCAACCGCTTCTCGTTAACGCTACCCTCCAGTCCAATAATGTATCCGTTCCGAGGAATAAGGAAGGTAGTTTTGCTGACATCATTGATCGTGCTTTGGAGAACGAGTTCAAGGAGAATGACCAGAATGAAGCAATTGATGCAGGAAGCTTCAACAACAGTGTAGCAGAGCAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAACGTTTTCAATTTGGACAGTGATAATAGAGCTGAAGATACTCCTACATTGATTGATCGAAAGGACAATGTCTTTATAATATCCAACTTCAAGTCTAAATATCCAGTGCTACAATTAGACTTGAGATTGATCTCTGATTTGGTAATCGTAATTGTCTCTGCAACTTGTGGTGGCATTGCCTTCGCATGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTTGTCAGTGAAATGGTTCAAGTTGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACGGCTAAGCTTCGAGTTGTTCGTGCGGTTGCTGTTCTTGGTGGCCTGCTTCAAATTTTCTTGTTTATGTGCCTCAGTGGGATCACAGCCTCGTCATGCGGTGGGAGTGCTTCTGAAGGGGTTTTTGTTGGAGCATTCCTATCAATGTCCTCAACAGCAGTGGTGCTGAAGTTTTTGATGGAAAAGAACTCAACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATTTTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTACTTCCAGTACTAGGTGGGAATTCTGGTATTCTTCAAGGAGTAATATCCATGAGTAAAGTGTACGTTGGTGATCTTGGTTACTTTTTTGGTTGCTTTGTCAATTTTATCCCGTACATGTATTCCCTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAACGAACTCTATCAATTAGCCTCAGTGGCGTTCTGCTTGCTTGTAGCATGGGTCAGTATCTACTTTCTTTTTTCTGTTGTAGCGATAAGTTGGGGCTAAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATCAGGAACCTTTTTGCGGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAATTTTTGTGGAACCATGTCGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAGACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGGTATAACAACAGGACAGCACTTCTGGTTGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCTAATCTTCATCTAGTTGAGGGGAAACTGTATTTATTGCTTATTGGGACCACAGCCCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCTGCTGTAGTACATTTAGGTGTGCTATTGCGGTGGTTCTCTCCGGATAGTCTCGTCGAGATTGGATTTAAAGGAGACATCATCCGCTCAGACAGTGTAAAGCAGCGAGTTATGTTGATAGTCCAGGGACCTCATGATTCATGA 1785 42.52 MLKLLSSSPRIFIFIFIFLCSLPLLPSTALPISDSDQPLLVNATLQSNNVSVPRNKEGSFADIIDRALENEFKENDQNEAIDAGSFNNSVAEQQAVLETVARVKSKKNDTKEEKFQLQNVFNLDSDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAVLGGLLQIFLFMCLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVYVGDLGYFFGCFVNFIPYMYSLAFKVDDKSIITDQRTLSISLSGVLLACSMGQYLLSFFCCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTALLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRVMLIVQGPHDS 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23818752 23829157 - Lsi08G015790.1 Lsi08g01579 669505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01579 594 Pfam Sodium/hydrogen exchanger family 166 545 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi08g01579 594 PANTHER K(+) EFFLUX ANTIPORTER 6 13 594 - -
Lsi08g01579 594 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 13 594 IPR045158 GO:0015386|GO:0071805|GO:1902600
Lsi08g01579 594 Gene3D - 159 552 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01300 Lsi-Chr5:20759125 Lsi08g01579 Lsi-Chr8:23818752 0 dispersed
Lsi03g00654 Lsi-Chr3:8274147 Lsi08g01579 Lsi-Chr8:23818752 2.40E-19 transposed
Lsi05g02021 Lsi-Chr5:27221054 Lsi08g01579 Lsi-Chr8:23818752 1.03E-39 transposed
Lsi06g00267 Lsi-Chr6:3011521 Lsi08g01579 Lsi-Chr8:23818752 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01579 - - csv:101217282 934.48