Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01601 ATGGATATTACTGAGGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACTCTTTCTGCAATATACTGTAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCGTTGCATGTAGCACTAGAAAAGGCCAAGAATACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTCGAGAGGGTAAAAAATGCTCTACAAGGTAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTCGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGATATCAGATGACAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAATATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCAGTCATAATTGCGTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTGAGTGACGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGTCTCGCATTATCCGAAGAGTCTCTAAGTTTGTCACCTGTGGACTCTGTTGGTTCGTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGATGAGAATTGTGTAACCGAGGAGATCAAAGGAAATGTAGTGGATGACTACTCTGCTGAAGACCAGGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCTTAAATGAAGAAGCTGACTTGAAGAAAAAGTCGGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGAATGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGATTTGTTCAGGGACTTCTACGGTACTTAGAGGTAGCTGTGCAAGAACAAAATACCAAGGCTCAGGAAAGTGGGGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATTTGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAAACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTGCAGCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGAACAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTTTGCAATGGGAATGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATATCTGTGAACGGGACAGCAAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGTCAACGGGAGCCACCAGCACCGACACCGATACCAATACCGATACCGATACCGACACCGACACCGACACCGACCGAGCAATCAGAGAGTAGCGGGACATCTATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACAGGAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATTCTAA 2346 43.9 MDITEVEENLFAASDAKLHGGMCKTLSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFERVKNALQGSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEISDDNDSQGSGPCSPTVQSSLEDSGAGGNGQAFERQLTNIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQHGVPVPDGPPDSLDLNYWSLALSEESLSLSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDYSAEDQESNVNMLARYEQYLKVLNEEADLKKKSAVVEQIRLLLKNDEEARIFMGANGFVQGLLRYLEVAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHGFATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLAARLDRTWTEKCIAILINLASSESGREQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFREQRQREPPAPTPIPIPIPIPTPTPTPTEQSESSGTSMPVAESKPLCKSISRRKTGKAFSFLWKSKSYSVYQF 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23977495 23982697 + Lsi08G016010.1 Lsi08g01601 669527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01601 781 SUPERFAMILY RING/U-box 279 355 - -
Lsi08g01601 781 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lsi08g01601 781 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lsi08g01601 781 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lsi08g01601 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Lsi08g01601 781 SUPERFAMILY ARM repeat 428 706 IPR016024 -
Lsi08g01601 781 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lsi08g01601 781 MobiDBLite consensus disorder prediction 222 252 - -
Lsi08g01601 781 MobiDBLite consensus disorder prediction 716 734 - -
Lsi08g01601 781 PANTHER U BOX DOMAIN-CONTAINING 1 726 - -
Lsi08g01601 781 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 726 - -
Lsi08g01601 781 MobiDBLite consensus disorder prediction 713 753 - -
Lsi08g01601 781 Gene3D - 408 715 IPR011989 -
Lsi08g01601 781 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01601 Lsi-Chr8:23977495 Lsi04g00088 Lsi-Chr4:1040825 1.13E-49 dispersed
Lsi07g00257 Lsi-Chr7:2817688 Lsi08g01601 Lsi-Chr8:23977495 2.72E-99 transposed
Lsi04g00666 Lsi-Chr4:6078552 Lsi08g01601 Lsi-Chr8:23977495 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01601 - - csv:101220593 1377.46