Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01612 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAACGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACAGCCACAGCAGACTCATCAGCAGCACCAAATGATGCTTGGTGATAGCAGCGGTGAGGATCATGAAGTCAAGGCTCCCAAGAAGCGAGCGGAGACTTGGGTTCAGGATGAGACTCGAAGCTTGATTGCCCTACGACGGGAGATGGATGGATTGTTTAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCCAAGATGTCGTGTTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGACAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGCAGGTGGCAGGCCGTCACTGAATCTTGAAAGACAACTAGATCACGATGGACATCCCCTTGCCATCACGGCAGCTGATGCAGTTGCTGCAGCGGGCATTCCACCTTGGAATTGGAGAGAGGCATCCGGAAATGGTGGGGAGAGTCAGGCATTTGGTGGGAGAGTAATATCAGTGAAGTGTGGGGACTACACAAGAAGAATTGGTGTTGATGGCACCTCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCAGATTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAAGTACACTCTTCACCTTGATGAAGGCGTGGCTGTTAAAATCTGCCTCTATGATGAGTCTAACCACTTATCGGTACATACTGAAGACAAAGTTTTTTACATTGAAGAAGATTACCGAGATTTTTTAGCTCGTCGAGGCTGGACATGCCTTCAGGAGTTAGATGGGTATAGAAACATCGATAATATGGATGATCTTCGACCTGGTGCAATGTACCGTGTATCGTCTCATCTGTACAGTGAGTATTGCATGTTTCCGAAGATGTCTATGAAATACATAAATGTAAAAAGAGATACCATTGTCGCTATCTCACAAGTGAACCAACAGTATCTTGATTTCCGTTTAGCATTTGGGTACATTGTATCTTTGGAACTAACGGCTTATTAG 1311 45.92 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAAAGIPPWNWREASGNGGESQAFGGRVISVKCGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGKYTLHLDEGVAVKICLYDESNHLSVHTEDKVFYIEEDYRDFLARRGWTCLQELDGYRNIDNMDDLRPGAMYRVSSHLYSEYCMFPKMSMKYINVKRDTIVAISQVNQQYLDFRLAFGYIVSLELTAY 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24067729 24071718 - Lsi08G016120.1 Lsi08g01612 669538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01612 436 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 381 - -
Lsi08g01612 436 MobiDBLite consensus disorder prediction 1 73 - -
Lsi08g01612 436 ProSiteProfiles Myb-like domain profile. 67 131 IPR001005 -
Lsi08g01612 436 SMART sant 71 133 IPR001005 -
Lsi08g01612 436 Pfam Myb/SANT-like DNA-binding domain 74 158 IPR044822 -
Lsi08g01612 436 MobiDBLite consensus disorder prediction 57 73 - -
Lsi08g01612 436 CDD GT1 73 138 - -
Lsi08g01612 436 Gene3D - 75 137 - -
Lsi08g01612 436 PANTHER - 5 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00753 Lsi-Chr7:8241774 Lsi08g01612 Lsi-Chr8:24067729 2.54E-08 dispersed
Lsi08g01612 Lsi-Chr8:24067729 Lsi10g00706 Lsi-Chr10:9874458 2.98E-07 dispersed
Lsi08g01612 Lsi-Chr8:24067729 Lsi03g02220 Lsi-Chr3:33225176 8.41E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25842 PF13837 Myb_DNA-bind_4 2.40E-20 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01612 - - csv:101222888 704.131