Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01621 ATGGAAAATGGCTTCTCTTCTCCTCGAAATGATGTGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGAGAGGCTCTGAGCCTGCTTAGGGAGAGGAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACTTGCCAGTTATAATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTCCAACACGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAAGCATCCAAATCCTAAGAAATGTGGCTGATAGGTATGATGATAGCCAGTTCCTTAGGGGAGAGGAACTGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTCTGTGACACTTCTTCCACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTCGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTAGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACAGATTCATGTTCGAAGGATGGAGATGGAAACTTCGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAAAATGTAGATTCCATAGGTTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTTCTAGGAGTGTTCCTGAACCAATAAAGTCGCAGTGTACGCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTCGCAGCATTTGATTCAAGCAACCGAAGCTGTTACCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGTAAGCCACTTGTGCACTTAGAAGGGGATTTCAATCAGTTCCCTCCAACGGTTCCGCCACACCAAGTTCAAATGGACCCACTACAATCGATTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAGATGGTCCATTTAAATCTACCAAAAACTTCAACTGATTCATTTCCTGGCAAGGGTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTGCTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAATTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 41.48 MENGFSSPRNDVFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIESIQILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAASRSVPEPIKSQCTQMKFNNSIHSVEPEGKFAAFDSSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIASSIESKPPYSEDCSQQMVHLNLPKTSTDSFPGKGKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24136876 24140728 - Lsi08G016210.1 Lsi08g01621 669547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01621 584 CDD REC_typeB_ARR-like 19 133 - -
Lsi08g01621 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Lsi08g01621 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 488 - -
Lsi08g01621 584 SUPERFAMILY CheY-like 16 142 IPR011006 -
Lsi08g01621 584 Gene3D - 194 257 - -
Lsi08g01621 584 MobiDBLite consensus disorder prediction 424 449 - -
Lsi08g01621 584 Gene3D - 17 182 - -
Lsi08g01621 584 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Lsi08g01621 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Lsi08g01621 584 PIRSF RR_ARR_type-B 1 519 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi08g01621 584 SMART REC_2 17 129 IPR001789 GO:0000160
Lsi08g01621 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Lsi08g01621 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 488 IPR045279 GO:0009736
Lsi08g01621 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Lsi08g01621 584 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00088 Lsi-Chr2:735922 Lsi08g01621 Lsi-Chr8:24136876 1.11E-19 dispersed
Lsi08g01621 Lsi-Chr8:24136876 Lsi09g01466 Lsi-Chr9:22652653 1.42E-95 dispersed
Lsi08g01621 Lsi-Chr8:24136876 Lsi05g01569 Lsi-Chr5:23459437 4.78E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25843 PF00072 Response_reg 1.20E-24 CL0304 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01621 - K14491 csv:101204370 1107.05