Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01627 ATGGCTTCCATATCACCTTACCGCCCAAATTTAGTGTTCTCTTCATTTCCGACCCGTGTTCCGAACTCAAACCCTCTATTTCATGGAGTTCAATTCCGAGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCAGATAACGCCGAGGTCTTTGTTAGAGAGTTGTTTGGCAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTTTCCACCGCCAAGCAGACTGACGATTGGTTTACGGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTCCTTACAGTTCTTGTTAAGGCTGCTACGTTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCGCAAGTGAAGGCTGTTCAGCAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTCGACTGTACAAATTAGCTGGCATAAACCCATTGGCAGGATGCCTTCCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACGATTGCCTCTCGACAAAATGGGAGTGGTATTTCTTGGCTCTTTCCATTTGTTGATGGTCACCCACCACTTGGGTGGTCAGATACCTTTGCGTATCTTGTCTTGCCAGTGTTGCTGGTCGTTTCACAGTACATCTCTGTTCAAATTATGCAATCGTCGCAGAATAATGATCCTAGCATGAAGAGTTCTCAAGCCATAACGAAGTTCCTACCGTTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTGGGTGGCGCAAAAACCCCAGACAAACAGTTCATTGATGAAATCATCAAACAAGAACAAGAACAAGAACAAGCCCGAGTCCAGAGCGAAGCACCCAAGTTAAACTCAATCTCAAGTAGCACAGTAGCCCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAGCCTGGTGAAAGATTTAAACAGTTGAAGGAGCAAGAGGCTAGGTTAAGACAGCAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCCAAGGTTGAATCTTTGATAATAAATGACAGTGACAAGAGCGCAACTGTTGGAGTTGTTGTCAATGGCAGTCTTTCTAGGCAGGATGTAAAGGAGGATCGAAACTCCATAACCACGACTACTGTGCAAAGAACTGATGTGGACAACGAGCCAAGTGCAACACAGGGAGAGGGAGTACTCGAGACATATACCAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1527 45.84 MASISPYRPNLVFSSFPTRVPNSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEVFVRELFGKAESVLYTIADAAVSASPENVSTAKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKTPDKQFIDEIIKQEQEQEQARVQSEAPKLNSISSSTVARQEEKLTAEGLKPGERFKQLKEQEARLRQQREEEKRKAEEAAKVESLIINDSDKSATVGVVVNGSLSRQDVKEDRNSITTTTVQRTDVDNEPSATQGEGVLETYTRVAKDAKLNGEEQRE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24187283 24192151 + Lsi08G016270.1 Lsi08g01627 669553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01627 508 PANTHER BNAA09G28180D PROTEIN 47 430 - -
Lsi08g01627 508 Coils Coil 405 435 - -
Lsi08g01627 508 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Lsi08g01627 508 MobiDBLite consensus disorder prediction 367 407 - -
Lsi08g01627 508 MobiDBLite consensus disorder prediction 457 493 - -
Lsi08g01627 508 MobiDBLite consensus disorder prediction 393 407 - -
Lsi08g01627 508 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 345 IPR028055 -
Lsi08g01627 508 PANTHER OXA1 47 430 IPR001708 GO:0016021|GO:0032977
Lsi08g01627 508 MobiDBLite consensus disorder prediction 372 391 - -
Lsi08g01627 508 MobiDBLite consensus disorder prediction 464 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01367 Lsi-Chr2:18469491 Lsi08g01627 Lsi-Chr8:24187283 5.37E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01627 K03217 - csv:101205346 893.264