Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01628 ATGGAAAATCCCATTTTTCTTCTAATAATAACATTCTTCAGTGTTCTTCTCCAAATGTGGTCTGTTTCATCTTCTCCAGTCGCTGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGTATCAACAATGCAACAACAAGACGAAATTTGGGATTCCTATCTTGTGGAATTGGGAATCCAATAGACGATTGTTGGCGATGTGATCCCAATTGGGAGAAGAATCGAAAGCGGCTAGCCGACTGTGCCATTGGGTTTGGGAAGCGAGCCATTGGTGGCAAAAACGGAAAATTCTACATTGTCACTGACCCCTCTGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCGTTATGGATTATCTTCAAACGTGACATGGTGATCAAATTAAAAGCAGAGCTTCTCATGAACTCTTTCAAAACCATCGACGGTCGCGGCGTGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGATGGGGTTTCCATATTTGGGGGCAGTCATATTTGGGTCGACCATTGCTCTTTGTCCAATTGTCGTGATGGGTTGATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCACAACAAAGTTATGCTTTTAGGGCATAGTGATTCCTATACACAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAAGGTCTTGTGCAAAGAATGCCACGATGTCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCACTGGATAATGTACGCCATTGGTGGAAGTGCATCCCCTACCATCAATAGCCAAGGAAATAGATACCTCGCTCCCAATAACCAAGATAGAAAAGAGGTGACAAAGCGAGAGGATGCACCACAGAGCAAGTGGAAGAATTGGAATTGGAGATCAGATGGAGATTTGATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCATCTAGCTATGCAAGAGCATCGAGCTTGAGTGCGAAGTCGTCGTCGCTGGTGAGCTCGATCACGGCGGGAGCAGGGGTGTTGCGGTGCCGAAAAGGCTCTAAATGTTAG 1224 46.24 MENPIFLLIITFFSVLLQMWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGIGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSITAGAGVLRCRKGSKC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24200656 24203075 + Lsi08G016280.1 Lsi08g01628 669554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01628 407 SMART amb_all 133 330 IPR002022 -
Lsi08g01628 407 Gene3D - 58 400 IPR012334 -
Lsi08g01628 407 PANTHER PECTATE LYASE 14 404 - -
Lsi08g01628 407 SUPERFAMILY Pectin lyase-like 40 402 IPR011050 -
Lsi08g01628 407 Pfam Pectate lyase 167 322 IPR002022 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lsi08g01628 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lsi08g01628 407 PANTHER PECTATE LYASE 18-RELATED 14 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01614 Lsi-Chr2:22008013 Lsi08g01628 Lsi-Chr8:24200656 0 dispersed
Lsi05g01093 Lsi-Chr5:18683540 Lsi08g01628 Lsi-Chr8:24200656 2.55E-178 dispersed
Lsi05g01813 Lsi-Chr5:25363141 Lsi08g01628 Lsi-Chr8:24200656 0 dispersed
Lsi08g01628 Lsi-Chr8:24200656 Lsi09g01161 Lsi-Chr9:18677108 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01628 K01728 - csv:101208076 736.873