Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01639 ATGTCAAAACCCTGGGGCGGAATCGGAGCCTGGGCCGCTGATGCCGAGCGTGCCGAGGCTGAGGAACGGGAGGCGGAAGCTGCTGCGGCCGCCTCCCAAGGAGAATCGAAGAATTTCCCTAGCCTTAGGGAAGCTGTTAGCACCAAGCCCAAGAAGAAGAAGATGTCGCTGTCGGAATTCACTATGGGAACCTTGACGGGTCCTGGCACCGGCGGCAGGCAAACGGAGAGCCAGGGCTTGACGCCTGAGGAGATGATTCGGCTTCCAACTGGTCCGAAAGACCGCTCTGGTGAGGAAGTGCGTTCTGGCCGCCTCGGTGGGGGATTTCCCACTTATGATCGGCACAGTATGTCTGCTGGTCGATATCGAGACCGCGATGAAGGCGATGGGTCCTGGGGTAGTGGTCGACGATCGTATGGTGGGTTCGACGAGGAACGCAGGGGTCCATCTCCTAGGGCTTCCAATTTCGATCAACCTTCGAGGGCTGACGAGGTGGATAATTGGGCAATGACGAAGAAATCTCCCACATTGGATTCGGGTCGACAAAATAGGTATGGGTCGCTAGGCGGTGGCGTGGGTGGGATTGCATCTAGGGCAGACGAGGTCGATAACTGGGCAAGTGTCAAAAAGCCTATTCCATCCAGATCCTCCACATTTGGTTCTGGTTATCGTGAGGCGAATGAGCCTGATCGCTGGGGTAGAGGCCGTTCACGTGATAGTGACACAGAACGACCCCGATTAGTATTGGATCCACCTAAAGGTAATGTCGTTACAAATGAAGCAACGAGGACGAACAAGCCAAGTCCTTTTGGAGCAGCAAGGCCGAGAGAGGAGGTTTTGGCTGAGAAGGGGTTGGATTGGAAGAAGCTGGATACAGAAATTGAGACCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGGCCTTCGAGTGCTCAATCCAGCCGTTCGGAGGGTCCAGGATTACAGGGTGTAGAAAATGCGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAACCTAGGGAAGTTTTGCTGGAGGAACGTGGCAAGGACTGGCGAAAGATAGATCTGCAACTTGAGCATCGTGCTGTTGACAGGCCCGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTCCTAAGAAAGGAACTTGAGAAAGGCTTATCTCTGAATGCTAACAAAGAATCGGTGCAAGAATCTGCTGGAGAGATGCAAAATCTACATGACAGAATTAATAAAAAAGAACGTGAACTGGAGATGCTGATCCTTGATTTGGATGATAAAGTTCGCTTTGGAAAGAAAGCCACTGAAAGACCTGGCTCTGGAGCAGGCAGGGCTGCTGTCTTTCCAGAAAGACCTGGATCTGGAGCAGGTAGGGCCGCTGTCTTTCCAGAAAGACCGCCTTCTCAAGGATCCTTTGATGAGTCCAGAAGTTTTGAGTCTATAGACAGACCTCGATCACGTGGCACTGCAGATGTATGGAGTAGATCCGCTGATGATAGAAAACCAATCCAAGGTGCCAGAGATAGAGGATTTTTGGGCAACAGAGACATGGAGAGGTTTGGATTTGTTTGTCATTATGTTCCTCTTTGTTGA 1614 51.36 MSKPWGGIGAWAADAERAEAEEREAEAAAAASQGESKNFPSLREAVSTKPKKKKMSLSEFTMGTLTGPGTGGRQTESQGLTPEEMIRLPTGPKDRSGEEVRSGRLGGGFPTYDRHSMSAGRYRDRDEGDGSWGSGRRSYGGFDEERRGPSPRASNFDQPSRADEVDNWAMTKKSPTLDSGRQNRYGSLGGGVGGIASRADEVDNWASVKKPIPSRSSTFGSGYREANEPDRWGRGRSRDSDTERPRLVLDPPKGNVVTNEATRTNKPSPFGAARPREEVLAEKGLDWKKLDTEIETKRTSRPTSAHSSRPSSAQSSRSEGPGLQGVENAVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLEHRAVDRPETEEEKMLKEEIDVLRKELEKGLSLNANKESVQESAGEMQNLHDRINKKERELEMLILDLDDKVRFGKKATERPGSGAGRAAVFPERPGSGAGRAAVFPERPPSQGSFDESRSFESIDRPRSRGTADVWSRSADDRKPIQGARDRGFLGNRDMERFGFVCHYVPLC 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24272409 24276983 + Lsi08G016390.1 Lsi08g01639 669565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01639 537 Pfam Plant specific eukaryotic initiation factor 4B 1 459 IPR010433 GO:0003743
Lsi08g01639 537 Pfam Plant specific eukaryotic initiation factor 4B 457 517 IPR010433 GO:0003743
Lsi08g01639 537 MobiDBLite consensus disorder prediction 483 517 - -
Lsi08g01639 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 528 - -
Lsi08g01639 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 528 IPR010433 GO:0003743
Lsi08g01639 537 MobiDBLite consensus disorder prediction 303 322 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 440 517 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 117 132 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 227 248 - -
Lsi08g01639 537 Coils Coil 15 35 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 1 346 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 276 302 - -
Lsi08g01639 537 Coils Coil 403 430 - -
Lsi08g01639 537 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01639 Lsi-Chr8:24272409 Lsi10g00469 Lsi-Chr10:6804811 8.31E-32 dispersed
Lsi08g01639 Lsi-Chr8:24272409 Lsi11g01184 Lsi-Chr11:20325688 4.31E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01639 - - csv:101206526 901.738