Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01657 ATGAGGGAGGTGACAATCAAGACTCGATCGCCACTTGGATTGTTCATTTTGATCACCGCCCTTCTCTTACTTCAATCATCCACAGTGGCAGACCCTAGATCCCGAACCGTCAAGATACTATGTTCAACCGTGCGAGAACACAATACAACGGCCTTTGTGCCCAATTTCGTGGCCACAATGCAAATAATCAGCGATCAAATGCGAACCGGTGGGTTTGGAGTCGCAGTTGCGGGCAAAGGCCCGGACGCCAACTACGGCCTAGCTCAATGTTACGGAGATTTGTCGTTGATGGACTGTGTGTTGTGTTATGCGGAAGCCCGTACCGTCCTTCCTCAATGCTTCCCTTTTAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCAGCAACTCCATTTTTGGACAGTCGGCCAGGCAGGCTGTGGCCCGAGCAATCGAAACTGCATCCAACAATGGAGGGTATGCCAGAATTCAAGTGGCTCCCACTGGAACCCCCAATGCCTCCGTTTACTTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAACCTTGACTTCTTAAATGCCGAAGCTTCAGCATCAAGGTCAAGGGGTACTATTATAGAAATTATAGTCTCACTGGTGAGCTCTGTTGCTGTTTTATTCGTTGGAGTGTTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGAAGAAACGAAGAGGCTCACCTGATTACCATTTATTTTATATATTCAAAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGGAGTTTTGTCGGATGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAATAAACATAGAGCAGCAGATTTTTACAATGAAGTAAACATAATTAGTAGTGTGGAGCACAAGAATTTAGTACGGTTGCTTGGTTGTAGTTGTTCTGGACCTGAAAGTCTACTCGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAATCACTCACTTGGGAGAAGAGATTTGATATTATTGTGGGAACAGTTGAAGGTTTGGCTTACCTTCATGAGAACTCGAAAACCAAGATCATTCATAGAGACATCAAGGCTAGTAACATCCTGCTAGACTCCAAGCTTCGAGCTAAAATAGCTGATTTCGGATTAGCTAGATCCTTTGAAGAAGATGAGAGTCACATCAGCACTGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACCGTGACTGGCATACAAAACAGTAGAAGCAAAACCTCAGACTACTTGGAAAGCATAGTACTAATTGTATGGAAGCATTTTCAATCGGGAACAATGGAAAGGATATTGGATCCGAACCTTATAGTTGAGGAAGATGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGAAGATAGGGCTTCTTTGCACACAGGAGAGTGCATCTCTGCGACCCACAATGTCGAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGAGGATCCATCATGCTTCAACCTGACGGAAGCTTCTTCCTCAGCTGCCACCGTCACCCATAGTTCATTTCATCCCAGGCCTTGTGGAAGGAGAAAGCGAGGGCCAGGTGGTATTAGAACCGGAAAACGCCACAGTCCTTTTCTCCATCTCCTCCTCCTTTGTCAATTAGAACCATCCACTCCCATTACATCATCTCCTCATTTTCAAAACAAACATTTTAAACTTCTATATTGGGTACCACCTTTCGCAGAAACTGTCACCCAATCTTCTTCTTCTTCTTCTTCTTCAATCTCCGGACTCAACAGAACCCCAGATTCCATGGCGATCCAGCTTGTTTATGCTTCCAAATATGTCCCATTTTCACTCATCGCTATTCTTCTGCTGCTCGCAACTTCGACTCTGGGGAAGCCAAGAGATCAAACTGTGAGAGTGATCTGCGGGAAAGAACTGGAACACAACACCACCGCCTACGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCGGAACTTCAGGATTTGGAACCGCCGGTACTGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTATCACCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTTCCCCAATGCTTCCCTTTCAACGGTGGCCGAGCTTTCATCGATGGCTGCTTCCTCAGGTTTGAAAACTATACCTTTTTCGATGAATATAAAGGACCTGAAGACACTGCAGTTTGCGGGAACTTCACCCAAAATGACCCCAACTATAGACAAGCAGCCAAAGAGGCAGTGATGCAAGTGGTTAACGGTGCACCAGACAACAGAGGCTTTGCAAAAGCTCGAATGACTGTGCCTGGGATGGCGAATGAGTCTGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGCACATGTTTGCAAATTGCTTCTGCTTCAATGTTGCGATGTTTACCTCGAACGGAAGGGCGAGCACTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAACAAGGACATCCAAAATAGTTCCAGAGGTGGCACAAGAACTGAATTGATAGTTTCAGTTTTGAGTTCTGTTGTTGTGTTGATAGTCGGACTGGCGATTGGAGCTTATATCTGGAAGCGCAGACATATACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTCAAGAAGTTTGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGGGGGTTTGGCTCTGTTTATAAGGGAACTCTATCCGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTGGTAAGGTTACTTGGATGCAGTTGTTCTGGACCTGAAAGCCTTCTTGTTTATGAATTCCTACCAAACAAGAGTCTCGATCGCTTCATTTTCGATACCAATAACAGTAAAGCTCTTAATTGGGATAAGAGGTATAACATCATCACTGGAACGGTTGAAGGTTTAATATATTTACATGAAAATCCAAAGATCAAAATTATACACAGAGATATAAAGGCCAGTAATATCTTGCTGGATCTAAAGCTTCAAGCAAAAATAGCAGATTTTGGTTTAGCAAGGTCTTTCCAAGAAAGCAAGAGCCATATTAGCACGGCTGTTGCAGGAACCCTAGGATACATGGCTCCGGAGTATCTAGCTTATGGTCAGTTATCAGAAAAGGCCGATGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTGCAATATAGTGGCATTCAAGTCTCCGGAAACATTGAAAGTCTGGTCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAATCTCAATCTTCAGAATCACTATAACAAGAAAGTAAAGGATGAGGTAACAAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCGACGACCAACAATGTTGAAGGTACTAAGAATGCTGACCATGGAGGAAGAGCACCTTCCTCCGCCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTAATTCTAATACGGAGGGATCTTCTTCTACTGCCACAGTCGGCCATAGTTCTTTTTATCCCAGATAA 4185 44.42 MREVTIKTRSPLGLFILITALLLLQSSTVADPRSRTVKILCSTVREHNTTAFVPNFVATMQIISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFSGPLDRAVCGNNSISNSIFGQSARQAVARAIETASNNGGYARIQVAPTGTPNASVYLLAQCWRNLNRSSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGTIIEIIVSLVSSVAVLFVGVLIGIYIWNNRYVKKKRRGSPDYHLFYIFKGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKSLTWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIVWKHFQSGTMERILDPNLIVEEDGSIKEEILRVVKIGLLCTQESASLRPTMSKVLQMLMKKEEELPAPTNPPFMDERTMELNDTSEDPSCFNLTEASSSAATVTHSSFHPRPCGRRKRGPGGIRTGKRHSPFLHLLLLCQLEPSTPITSSPHFQNKHFKLLYWVPPFAETVTQSSSSSSSSISGLNRTPDSMAIQLVYASKYVPFSLIAILLLLATSTLGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIGTSGFGTAGTGIGPDASYGLAQCHGDLSPLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYTFFDEYKGPEDTAVCGNFTQNDPNYRQAAKEAVMQVVNGAPDNRGFAKARMTVPGMANESAAYALGQCWRSLNRSSCSTCLQIASASMLRCLPRTEGRALNTGCFMRYSNTDFLNKDIQNSSRGGTRTELIVSVLSSVVVLIVGLAIGAYIWKRRHIQKKRKGGSTDVKKFAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLSDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTNNSKALNWDKRYNIITGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQESKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVTGLQYSGIQVSGNIESLVTAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVTRVVHIGLLCIQEIPSRRPTMLKVLRMLTMEEEHLPPPTKPPFMDEMTMELDDSCKYSRCNSNTEGSSSTATVGHSSFYPR 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24371565 24383094 + Lsi08G016570.1 Lsi08g01657 669583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01657 1394 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
Lsi08g01657 1394 Gene3D Transferase(Phosphotransferase) domain 1 1142 1349 - -
Lsi08g01657 1394 Pfam Protein kinase domain 1067 1339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 Pfam Protein kinase domain 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Lsi08g01657 1394 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 Gene3D Phosphorylase Kinase; domain 1 1026 1141 - -
Lsi08g01657 1394 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Lsi08g01657 1394 SUPERFAMILY Protein kinase-like (PK-like) 322 637 IPR011009 -
Lsi08g01657 1394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 15 639 - -
Lsi08g01657 1394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 753 1373 - -
Lsi08g01657 1394 CDD STKc_IRAK 343 609 - -
Lsi08g01657 1394 ProSiteProfiles Gnk2-homologous domain profile. 878 985 IPR002902 -
Lsi08g01657 1394 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Lsi08g01657 1394 MobiDBLite consensus disorder prediction 1372 1389 - -
Lsi08g01657 1394 ProSiteProfiles Gnk2-homologous domain profile. 773 874 IPR002902 -
Lsi08g01657 1394 MobiDBLite consensus disorder prediction 1372 1394 - -
Lsi08g01657 1394 SMART serkin_6 1066 1343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 SMART serkin_6 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 15 639 - -
Lsi08g01657 1394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 753 1373 - -
Lsi08g01657 1394 ProSitePatterns Protein kinases ATP-binding region signature. 1072 1094 IPR017441 GO:0005524
Lsi08g01657 1394 Gene3D - 884 985 IPR038408 -
Lsi08g01657 1394 Gene3D - 34 135 IPR038408 -
Lsi08g01657 1394 Gene3D - 773 874 IPR038408 -
Lsi08g01657 1394 Gene3D - 144 245 IPR038408 -
Lsi08g01657 1394 MobiDBLite consensus disorder prediction 659 673 - -
Lsi08g01657 1394 CDD STKc_IRAK 1072 1342 - -
Lsi08g01657 1394 SUPERFAMILY Protein kinase-like (PK-like) 1050 1367 IPR011009 -
Lsi08g01657 1394 ProSiteProfiles Protein kinase domain profile. 1066 1357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01657 1394 Pfam Salt stress response/antifungal 48 133 IPR002902 -
Lsi08g01657 1394 Pfam Salt stress response/antifungal 889 982 IPR002902 -
Lsi08g01657 1394 Pfam Salt stress response/antifungal 151 242 IPR002902 -
Lsi08g01657 1394 Pfam Salt stress response/antifungal 797 872 IPR002902 -
Lsi08g01657 1394 MobiDBLite consensus disorder prediction 651 673 - -
Lsi08g01657 1394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1187 1199 IPR008271 GO:0004672|GO:0006468
Lsi08g01657 1394 ProSiteProfiles Gnk2-homologous domain profile. 34 135 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01367 Lsi-Chr3:24601731 Lsi08g01657 Lsi-Chr8:24371565 1.61E-149 dispersed
Lsi08g01657 Lsi-Chr8:24371565 Lsi01g00396 Lsi-Chr1:3401529 2.45E-81 dispersed
Lsi04g00566 Lsi-Chr4:5175720 Lsi08g01657 Lsi-Chr8:24371565 2.77E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83868 PF00069 Pkinase 8.70E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01657 - - cmax:111492443 2284.22