Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01663 | ATGGCGGAGAATACGTACGGCATGCGTTCCAATTCCACTTCCACTTCCCAATTCTCGCCTAAGTCCTTCATTTCATCTGACAATCCTATCCTTCCCCTCCATTACCACACCTTGCTTTCCTCCACCAACTTCCGCGATCGGATTCCTATGTTCGGATCCCATGAATTGCTTTCCCCTACTTCCGCCATATCCCAACCCGAACTACCTTCCACTACTTCAGATTTTCCGCTCGGACAGGATCTTCTCAGCCTCACCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTTTGCTTCAAGCTTATATTGACTGCCAGAAGGTTGGAGCCCCTCCGGAGATAGCTTGCTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCATAAACAAAACGCCATCTCCACGTGCTTTGGAGCTGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTCAAGTATAAATCAGATCTCTCAAGGCCCTTTCATGAAGCTTCTTCCTTCTTGAATAACATTCAACTGCAACTTAGCAACCTCTGTGCTGGTGCTTTCACCAGAAGCCCTTCCAGTCAGTCTCTCTCCCTTTCTATCAGTAATTGCTTCTTTTCGCACTCTATTTCCACTTAA | 636 | 47.64 | MAENTYGMRSNSTSTSQFSPKSFISSDNPILPLHYHTLLSSTNFRDRIPMFGSHELLSPTSAISQPELPSTTSDFPLGQDLLSLTKAKIVSHPTYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDSHKQNAISTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEASSFLNNIQLQLSNLCAGAFTRSPSSQSLSLSISNCFFSHSIST | 211 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 24399936 | 24402935 | - | Lsi08G016630.1 | Lsi08g01663 | 669589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01663 | 211 | SMART | KNOX1_2 | 83 | 127 | IPR005540 | GO:0003677|GO:0005634 | |
| Lsi08g01663 | 211 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lsi08g01663 | 211 | Pfam | KNOX1 domain | 86 | 126 | IPR005540 | GO:0003677|GO:0005634 | |
| Lsi08g01663 | 211 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 15 | 194 | - | - | |
| Lsi08g01663 | 211 | Pfam | KNOX2 domain | 137 | 183 | IPR005541 | GO:0003677|GO:0005634 | |
| Lsi08g01663 | 211 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 15 | 194 | - | - | |
| Lsi08g01663 | 211 | SMART | KNOX2_2 | 133 | 184 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00002 | Lsi-Chr2:7024 | Lsi08g01663 | Lsi-Chr8:24399936 | 5.00E-09 | dispersed | |
| Lsi08g01663 | Lsi-Chr8:24399936 | Lsi11g00638 | Lsi-Chr11:6717313 | 3.53E-41 | dispersed | |
| Lsi08g01663 | Lsi-Chr8:24399936 | Lsi04g00565 | Lsi-Chr4:5168784 | 1.77E-70 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01663 | - | - | csv:101210523 | 270.396 |