Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01663 ATGGCGGAGAATACGTACGGCATGCGTTCCAATTCCACTTCCACTTCCCAATTCTCGCCTAAGTCCTTCATTTCATCTGACAATCCTATCCTTCCCCTCCATTACCACACCTTGCTTTCCTCCACCAACTTCCGCGATCGGATTCCTATGTTCGGATCCCATGAATTGCTTTCCCCTACTTCCGCCATATCCCAACCCGAACTACCTTCCACTACTTCAGATTTTCCGCTCGGACAGGATCTTCTCAGCCTCACCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTTTGCTTCAAGCTTATATTGACTGCCAGAAGGTTGGAGCCCCTCCGGAGATAGCTTGCTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCATAAACAAAACGCCATCTCCACGTGCTTTGGAGCTGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTCAAGTATAAATCAGATCTCTCAAGGCCCTTTCATGAAGCTTCTTCCTTCTTGAATAACATTCAACTGCAACTTAGCAACCTCTGTGCTGGTGCTTTCACCAGAAGCCCTTCCAGTCAGTCTCTCTCCCTTTCTATCAGTAATTGCTTCTTTTCGCACTCTATTTCCACTTAA 636 47.64 MAENTYGMRSNSTSTSQFSPKSFISSDNPILPLHYHTLLSSTNFRDRIPMFGSHELLSPTSAISQPELPSTTSDFPLGQDLLSLTKAKIVSHPTYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDSHKQNAISTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEASSFLNNIQLQLSNLCAGAFTRSPSSQSLSLSISNCFFSHSIST 211
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 24399936 24402935 - Lsi08G016630.1 Lsi08g01663 669589
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01663 211 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Lsi08g01663 211 MobiDBLite consensus disorder prediction 1 20 - -
Lsi08g01663 211 Pfam KNOX1 domain 86 126 IPR005540 GO:0003677|GO:0005634
Lsi08g01663 211 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 15 194 - -
Lsi08g01663 211 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677|GO:0005634
Lsi08g01663 211 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 194 - -
Lsi08g01663 211 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00002 Lsi-Chr2:7024 Lsi08g01663 Lsi-Chr8:24399936 5.00E-09 dispersed
Lsi08g01663 Lsi-Chr8:24399936 Lsi11g00638 Lsi-Chr11:6717313 3.53E-41 dispersed
Lsi08g01663 Lsi-Chr8:24399936 Lsi04g00565 Lsi-Chr4:5168784 1.77E-70 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01663 - - csv:101210523 270.396