Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01665 ATGGAACCACCTTTTGTGTTATGGAAACCACTTTTTCTAGTTTTCGCACTCCTGGAACTTGCTTTTGCTACGTTATCTCCTTCTGGTGTGAACTACGAAGTCGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATCGATATGTTTCTGCTTTGGGGCTACCTAGCCAGAGTTTATCTGGGGTCTTATCACCGGGGATTGGAAACCTCACTAAATTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCCGCGACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATGTATTTGGTGGCCAAATACCCAGTTCCCTCGGAGACTTAAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCTAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCGTTGTCGTTTGCCCCAGATGCTCTTGAAGCAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCACTTCAACTCTAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAAGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGCTGAAGGATTATAACACCGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTTTGTTCTACTGAGAGTGAAAGACTTCTTGTTTATCCATTCATGCCCAATGGCAGTGTTGCATCTCGTCTAAGAGATGATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATCATCCATCGTGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTCGTTGGAGACTTTGGATTGGCCAAACTTTTGGATCACAGAGATTCTCATGTGACTACAGCGGTGCGTGGCACTGTAGGCCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTCGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTTGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGTAACTTCGACAGAGTTGAGCTAAAGGAAATGGTCCAGGTTGCCCTGTTGTGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTACTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATAGAAACGCCAAGATATCGACTGTGCGAGAATCCCCCTCAACGGTACTCAGATTATGTAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 44.43 MEPPFVLWKPLFLVFALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDRYVSALGLPSQSLSGVLSPGIGNLTKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFGGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAIFPEPLSFAPDALEANLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLRDDIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGNFDRVELKEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRLCENPPQRYSDYVEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24413379 24418724 - Lsi08G016650.1 Lsi08g01665 669591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01665 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Lsi08g01665 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Lsi08g01665 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 5 621 - -
Lsi08g01665 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Lsi08g01665 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01665 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01665 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Lsi08g01665 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Lsi08g01665 621 SUPERFAMILY L domain-like 31 192 - -
Lsi08g01665 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 621 - -
Lsi08g01665 621 SUPERFAMILY Protein kinase-like (PK-like) 274 572 IPR011009 -
Lsi08g01665 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Lsi08g01665 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Lsi08g01665 621 Pfam Protein kinase domain 299 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00233 Lsi-Chr1:2124878 Lsi08g01665 Lsi-Chr8:24413379 0 dispersed
Lsi06g01488 Lsi-Chr6:25343556 Lsi08g01665 Lsi-Chr8:24413379 2.75E-104 dispersed
Lsi08g00259 Lsi-Chr8:5908203 Lsi08g01665 Lsi-Chr8:24413379 0 dispersed
Lsi08g01665 Lsi-Chr8:24413379 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
Lsi10g01450 Lsi-Chr10:18578194 Lsi08g01665 Lsi-Chr8:24413379 6.92E-52 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83869 PF00069 Pkinase 3.70E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01665 - - csv:101208885 1163.29