Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00001 ATGCCGCTTGGTCTGATAGTTGTTGCGTCGGGCACTGAATTAATAGCGATGGCATCCTCCCATCCTCAAACGGAGAAGAGGGTTTTTGATTCAGAGGAAGATTTGGCTGTTTCTTTAGCCAAATACATCGCCAATTTGTCTCATCACTTTGCTAAGAAGAGAGGTCTTTTCACTGTGGTTCTCTCTGGTGGTTCTCTCATCGAATGTCTCAGGAAATTGGTGGAACCACCCTATGTTGATTCCATTGACTGGTCGATATGGCACATCTTTTGGCTCGATGAGAGAGTTGTACCCAAGACTCATGTTGACAGTAACTACAAACTCGCTTATGATGGTTTTCTCTCTAAGGGTTGCAATGATGATTTAAATTGTAAAATAACCTCAACACTTACAAATAACTCGACCACTATTCTTAAAAACGTTTTTGAGAACAAAAGCAGACAGTTCATTTCCCAGGTTCCAATTCCCCCTGGTAACGTGTATGCCATTGATGATACTCTATCAGCTGAGGGTGCCGCTGAAGAATATGAAGCACGTCTGAAGCATTTGGTGTATAGCAAAGTGATTGATGTCTCAGCAGAAAGCGGTTTCCCGAAATTTGATCTGAATCTTCTTGGAATGGGACCAGATGGGCATGTGGCTTCTTTATTCCCAGGACACCCTCTTCTGAAAGAGAATAAGAAATGGGTTACCTTCATCAAGGACTCTCCGAAACCGCCTCCGGAGAGAATCACTTTAACCTTTCCAGTTATCAACTCATCGGACTACATTGCTCTTGTGGTGCCTGGTGCTGCCCAAGCAGATGTTGTGAGCATTGCATTAGGAGGAGGAAATCCTCCCACTGCTGAAACATTACCTGTTCAAAGGGTTGCTCCTTTATCTGGTGCATTCGTGGTGAGTTGTACTTACCCTGTGCATTTGAATAAGAGTGTCTGTATCGCGTCTTTCTCACTCCCTTCCACGCTTCCTACACTCTCTTCTGCTCTCCCAAAATCTCCTAACCTTTGCTTTCCCCTTCACTCTCTCTCGGTTCCCTCCAATCCCCCTGTTTTCTCCCTCAGCTTTTCCCAGATTTTCTCTCCGGTTTCTCGTTTACATCCCGCCAAGAAGCAGCTCGGTTCCAGAGCTATTGCCTCCTCTACTGACATGGCATCGGAGAAGAGGGTTTTTGATTCTGGGGAAGATTTGGCTGTTTCTCTAGCCAAATACACCGCCGATTTGTCGGACCACTTTGCCAACAAGAGGGGCGCTTTCACTGTCGTTCTCTCTGGTGGATCTCTGATCAAATGCCTCAGGAAATTGGTGGAGCCACCGTATGTTGATTCAATAGACTGGTCGAAATGGCACGTGTTTTGGGTTGATGAGAGAGTTGTACCCAAAGATCACGTTGACAGCAACTACAAACTTGCTTATGATGGATTTCTTTCTCAGCTTGTTTTCATGTATGATCTATTGTTAGAACAACTGAGTACCCGGTGTGGTGTGGATAAGTGGTCCTTGACACCTAAAATAAAATCCACAGAGGTGCCGATTCTCCCTGGTCACGTTTATGCTATTAACGATGCACTGTCTGCTGAGGGTGCAGCTGAAGATTATGTAACCTGCCTAAAGCATTTGGTAGATACCAAAGTGGTTGATGTCTCAGCAGCAAGCGGGTTCCCAAAATTTGATCTTATGCTTCTTGGTATGGGCCCAGATGGGCATGTGGCTTCTTTATTCCCAGGTCATCCCCTCCTCAATGAGAATCAGAAATGGGTCACCTTCATCAAGGATTCCCCAAAACCGCCCCCAGAGAGAATCACTTTCACCTTTCCGGTTATCAACTCATCAGCGTACATTGCACTTGTGGTGCCTGGTGCTAGCAAAGCAGATGCTGTGCATACTGCACTAGGAGGAGGAGGTTCCCAGAATGCTGAAACATTACCTGTTCAGAGGGTTGCTCCTGAAGGGGTTTTGACATGGTTCTTGGACAAGGATGCTGCTTCCAAGCTGTAA 1995 45.86 MPLGLIVVASGTELIAMASSHPQTEKRVFDSEEDLAVSLAKYIANLSHHFAKKRGLFTVVLSGGSLIECLRKLVEPPYVDSIDWSIWHIFWLDERVVPKTHVDSNYKLAYDGFLSKGCNDDLNCKITSTLTNNSTTILKNVFENKSRQFISQVPIPPGNVYAIDDTLSAEGAAEEYEARLKHLVYSKVIDVSAESGFPKFDLNLLGMGPDGHVASLFPGHPLLKENKKWVTFIKDSPKPPPERITLTFPVINSSDYIALVVPGAAQADVVSIALGGGNPPTAETLPVQRVAPLSGAFVVSCTYPVHLNKSVCIASFSLPSTLPTLSSALPKSPNLCFPLHSLSVPSNPPVFSLSFSQIFSPVSRLHPAKKQLGSRAIASSTDMASEKRVFDSGEDLAVSLAKYTADLSDHFANKRGAFTVVLSGGSLIKCLRKLVEPPYVDSIDWSKWHVFWVDERVVPKDHVDSNYKLAYDGFLSQLVFMYDLLLEQLSTRCGVDKWSLTPKIKSTEVPILPGHVYAINDALSAEGAAEDYVTCLKHLVDTKVVDVSAASGFPKFDLMLLGMGPDGHVASLFPGHPLLNENQKWVTFIKDSPKPPPERITFTFPVINSSAYIALVVPGASKADAVHTALGGGGSQNAETLPVQRVAPEGVLTWFLDKDAASKL 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12968 20664 + Lsi09G000010.1 Lsi09g00001 669614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00001 664 Gene3D - 15 300 - -
Lsi09g00001 664 CDD 6PGL 394 656 IPR005900 GO:0005975|GO:0006098|GO:0017057
Lsi09g00001 664 SUPERFAMILY NagB/RpiA/CoA transferase-like 27 116 IPR037171 -
Lsi09g00001 664 SUPERFAMILY NagB/RpiA/CoA transferase-like 509 664 IPR037171 -
Lsi09g00001 664 PANTHER 6-PHOSPHOGLUCONOLACTONASE 17 298 IPR039104 -
Lsi09g00001 664 PANTHER 6-PHOSPHOGLUCONOLACTONASE 368 664 IPR039104 -
Lsi09g00001 664 TIGRFAM pgl: 6-phosphogluconolactonase 509 664 IPR005900 GO:0005975|GO:0006098|GO:0017057
Lsi09g00001 664 SUPERFAMILY NagB/RpiA/CoA transferase-like 147 295 IPR037171 -
Lsi09g00001 664 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 394 654 IPR006148 GO:0005975
Lsi09g00001 664 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 31 116 IPR006148 GO:0005975
Lsi09g00001 664 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 146 295 IPR006148 GO:0005975
Lsi09g00001 664 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3, CHLOROPLASTIC 17 298 - -
Lsi09g00001 664 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3, CHLOROPLASTIC 368 664 - -
Lsi09g00001 664 SUPERFAMILY NagB/RpiA/CoA transferase-like 388 478 IPR037171 -
Lsi09g00001 664 CDD 6PGL 33 295 IPR005900 GO:0005975|GO:0006098|GO:0017057
Lsi09g00001 664 Gene3D - 385 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00001 K01057 PGLS, pgl, devB; 6-phosphogluconolactonase [EC:3.1.1.31] - csv:101206872 534.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00357 Lsi-Chr4:3571581 Lsi09g00001 Lsi-Chr9:12968 4.42E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g989 . . Bda05g00137 . Bpe03g00225 . Bma10g01315 . Cmo16g00030 . Cma02g01142 Cma15g01007 Car02g00946 Car15g00940 . Cpe05g00582 Cpe14g00020 . . . . . . . Cla01g00021 Cam01g0020 Cec01g0018 Cco01g0022 Clacu01g0021 Cmu01g0020 Cre09g2487 Cone1ag1010 Cone5ag0718 . . . Csa05g00023 Chy09g01460 . Blo07g00320 . . . . . . . . Cmo02g01173 Cmo15g01070 Cma16g00026 . Car16g00023 . . Cpe13g00330 Bhi12g00684 . . . Hepe06g0819 . . . . . . . . . Lsi09g00001 . . Cme09g02009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001721 4 2 1 1 1 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 5 3 3 3 1 1 2 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00001 Lsi_Chr09 FPKM 11.153098 10.982982 12.000716 11.062543 14.967074 12.891604 15.504602 13.332868 13.126711 14.580917