Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00002 ATGTTCTTCATCATTCCCTCCCCCTCCTCCGGTGCCGGCGCCGGATTTGGATTCCGGGAAATGTCTTTGCCTTCCTCAGCTACTGCCGTCGCCATCACTCCCTTGCCGGAGTTCTACGTAACTCAAACTTCGTCGTCATCCAATTCCAATTCCAATTCCAATTCCAACTCCAATTCTTCTTCTCCTTCCTCATCCTGGGTTCACTTGCGTTCCGTTTTAGTGGTTGTCAGCTCCTCCTCGCCAGCTTCATGTTCTTCCTCTGATCGGAGTCGTCTCAAATCACCATGGTCGCGTAGAAAAAGAAAACATGCACTTTCACCTCGACAGTGGAAAACTGTGTTTAATCCAGATGGGAAACTCCGCGATGGTGGAATTAAGTTTCTAAAAAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATTCGGGCAGAGGTTTGGCCTTTCATTCTTGGAGTTATTTACGCTGGATTCTTTATGCAGTACTTTAGATTAAAGGAATATGAAAAACTCCGCAAACAGTGCAGGCGGTTGATAAAACGTAGGAATGATGGCTCTAAGTGGAATGAATTTAGGGACATGATTGATGTCGGGGAAGATGGCTTTCTTGTCCGAGACATAGATTCTCCCAGTTCTGAAGACGTGGTTAGTGCTAGAGAGTCCCTTTCAAGCGAAGAAAGGTGCTCCAATGTTGAATTTTTAGATGAAGCCTTCTGCTCTTTGTTGGAAGGGGAGGGCAGCTCAAGACGGATAACAGCTGATAGTTCTTTGGTACTTAATTCGGACTCCTCCGACTCGGACTCCTCAGATGACTTGGATCTTAGTCAAACCTTTCCCTCCACAGATGGAATGGAAGAGCCTTATCTTGATATGACACCCAAGGAAAATTCTTCTCCCTCTAGGACCGAGGTCTCATCAAAGCTCCATAATAGTGAAGATTTTGCAACATGGCAGCGGATTATTCGACTTGATGCACTTCGTTCTAACTCAGAATGGGTACCATACTTGTCATCTCAAGTAATGGTTTCGGATGGCAGAGCCAGGCGGTGTGCTGAAGCTGTTGGTTTAGTTGATTACGACCATCTAGAACCTTGTATGATTTTCCATGCTGCAAGGCTAGTGGCAATTCTTGAAGCATATGCTCTCTATGACCCTGAAATTGGTTATTGTCAAGGCATGAGCGATCTACTCTCTCCAATCATTACTGTGATTTCAGAGGATCATGAGGCATTCTGGTGTTTTGTTGGTTTCATGCGCAAGGCTCGCCACAACTTTAGGCTTGATGAGGTTGGGATTAGAAGGCAATTAAACATAGTCTCGAAGATCATTAGGTGCAAGGACTCGCACCTTTACAAGCACCTGGAGAAACTTCAGGCCGAGGATTGCTTTTTCGTTTACCGGATGGTTGTGGTGCTATTCAGAAGGGAATTGACATTTGAACAGACGTTATGTCTGTGGGAAGTGATATGGGCTGACCAGGCAGCCATAAGGGCTGGAATAGGGAAGTCCGCATGGAGCAGGATAAGGCAACGAGCTCCACCAACAGATGATCTACTGCTCTATGCGATCGCTGCTTCAGTACTGCAGAGAAGAAAACTCATCATAGAGAAATATAATAGCATGGATGAAATTCTGAGGGAATGTAATAGCATGGCTGGGCACCTTGATGTGTGGAAGCTTCTCGATGGTGCACATGATTTGGTGGTAACCTTACACGATAAGATAGAGACGTCCTTCCAGTAA 1737 45.65 MFFIIPSPSSGAGAGFGFREMSLPSSATAVAITPLPEFYVTQTSSSSNSNSNSNSNSNSSSPSSSWVHLRSVLVVVSSSSPASCSSSDRSRLKSPWSRRKRKHALSPRQWKTVFNPDGKLRDGGIKFLKKVRSGGVDPSIRAEVWPFILGVIYAGFFMQYFRLKEYEKLRKQCRRLIKRRNDGSKWNEFRDMIDVGEDGFLVRDIDSPSSEDVVSARESLSSEERCSNVEFLDEAFCSLLEGEGSSRRITADSSLVLNSDSSDSDSSDDLDLSQTFPSTDGMEEPYLDMTPKENSSPSRTEVSSKLHNSEDFATWQRIIRLDALRSNSEWVPYLSSQVMVSDGRARRCAEAVGLVDYDHLEPCMIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIITVISEDHEAFWCFVGFMRKARHNFRLDEVGIRRQLNIVSKIIRCKDSHLYKHLEKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYNSMDEILRECNSMAGHLDVWKLLDGAHDLVVTLHDKIETSFQ 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22908 28569 + Lsi09G000020.1 Lsi09g00002 669615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00002 578 Pfam Rab-GTPase-TBC domain 370 490 IPR000195 -
Lsi09g00002 578 ProSiteProfiles TBC/rab GAP domain profile. 135 491 IPR000195 -
Lsi09g00002 578 MobiDBLite consensus disorder prediction 80 108 - -
Lsi09g00002 578 MobiDBLite consensus disorder prediction 43 64 - -
Lsi09g00002 578 MobiDBLite consensus disorder prediction 291 305 - -
Lsi09g00002 578 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 43 573 - -
Lsi09g00002 578 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE 43 573 - -
Lsi09g00002 578 SMART tbc_4 132 517 IPR000195 -
Lsi09g00002 578 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 113 451 IPR035969 -
Lsi09g00002 578 MobiDBLite consensus disorder prediction 258 305 - -
Lsi09g00002 578 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 428 565 IPR035969 -
Lsi09g00002 578 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 250 423 - -
Lsi09g00002 578 MobiDBLite consensus disorder prediction 258 280 - -
Lsi09g00002 578 Gene3D - 427 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00002 - - - csv:101206391 907.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00362 Lsi-Chr7:3857151 Lsi09g00002 Lsi-Chr9:22908 1.75E-24 dispersed
Lsi09g00002 Lsi-Chr9:22908 Lsi11g00340 Lsi-Chr11:3523602 5.42E-25 dispersed
Lsi09g01112 Lsi-Chr9:17836340 Lsi09g00002 Lsi-Chr9:22908 4.72E-13 transposed
Lsi05g00125 Lsi-Chr5:1919467 Lsi09g00002 Lsi-Chr9:22908 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g990 . . Bda05g00136 Bda07g01953 . . Bma10g01314 Bma14g02024 Cmo16g00032 Cmo18g01368 Cma02g01140 Cma15g01009 Car02g00945 Car15g00941 . Cpe05g00583 Cpe14g00021 Bhi01g01525 . . . Hepe07g0036 Mch10g0034 . Cla01g00022 Cam01g0021 Cec01g0019 Cco01g0023 Clacu01g0022 Cmu01g0021 Cre09g2486 Cone1ag1009 Cone5ag0717 . . . Csa05g00024 Chy09g01459 Cme06g01172 Blo07g00321 Blo09g00006 . . . . . . . Cmo02g01172 Cmo15g01072 Cma16g00027 Cma18g01336 Car16g00024 Car18g01251 Cpe09g00012 Cpe13g00328 Bhi12g00683 . . . Hepe06g0818 . . Cla05g00990 Cam05g1081 Cec05g1089 Cco05g1083 Clacu05g1075 Cmu05g1025 Cre05g1099 Lsi09g00002 Csa03g01962 Chy06g01174 Cme09g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00002 Lsi_Chr09 FPKM 5.512195 10.380258 10.473658 6.97724 11.51754 9.250777 10.995903 6.622373 7.984574 10.929877