Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00003 ATGGCTTCGGATCCGAAGGTTCATCTATTCGAAGAAGTGGCAAAGCACAACAAAACCAAAGATTGCTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGGCAGCAACTGGAAAAGATGCCACGAACGATTTTGAAGATGTTGGGCACAGCGATTCGGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACCCAATACAACCCAGATAAGACACCTGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATGA 405 41.23 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLAATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27466 31313 - Lsi09G000030.1 Lsi09g00003 669616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00003 134 Gene3D - 1 86 IPR036400 -
Lsi09g00003 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Lsi09g00003 134 Coils Coil 132 134 - -
Lsi09g00003 134 PANTHER CYTOCHROME B5 1 132 - -
Lsi09g00003 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Lsi09g00003 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lsi09g00003 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lsi09g00003 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lsi09g00003 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lsi09g00003 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lsi09g00003 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lsi09g00003 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Lsi09g00003 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g00003 Lsi-Chr9:27466 7.92E-59 dispersed
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g00003 Lsi-Chr9:27466 3.17E-68 dispersed
Lsi09g00003 Lsi-Chr9:27466 Lsi09g01152 Lsi-Chr9:18461940 1.07E-50 dispersed
Lsi09g01601 Lsi-Chr9:24153292 Lsi09g00003 Lsi-Chr9:27466 4.81E-11 transposed
Lsi09g01656 Lsi-Chr9:24931374 Lsi09g00003 Lsi-Chr9:27466 1.60E-37 transposed
Lsi05g02160 Lsi-Chr5:28295920 Lsi09g00003 Lsi-Chr9:27466 1.21E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00003 K23490 - csv:101207109 271.937