Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00006 ATGGAGATTTTCTACTTCTTGGTGTTTGGAGCATTGTCTCTTGTTGTTGCAACTCTCGAGCTCACCAAAACCAACAAGGACCGGATCAATACGCCCTCCGCTTTCAATGCCTTCAAGAACAATTACCTTCTCGTTTACTCTCTCATGATGGCTGGGGACTGGTTGCAGGGCCCATACGTATACTACCTTTACAGTCAGTATGGCTTTGGTAAAGGAGAGATCGGTCAGCTTTTCATTGCTGGTTTTGGGTCCTCCATGTTGTTTGGTACAATTGTTGGTTCTCTTGCTGACAAACAAGGTCGAAAGAGGGCTTGCATTACTTATTGTATTACATACATTCTGAGTTGCATCACCAAGCATTCTCCTGAATACAAGGTTCTAATGTTAGGCCGTGTTTTGGGAGGTATTGCCACTTCGCTCCTCTTTTCAGCATTTGAGTCATGGCTTGTTGCAGAGCACAATAAGGCAAGATTCCACAGGGGCTTTGAACAGCAATGGTTGTCTATTACATTCTCAAAGGCTATATTTCTTGGCAATGGTCTTGTTGCAATTCTTGCTGGGTTGTTTGGGAATGTACTAGTTGATAGTCTGTCTCTTGGACCAGTGGCACCTTTTGATGCCGCTGCATGCTTTCTTGCAATTGGCATGGCCATTATTATGTCATCTTGGACTGAGAACTATGGGGATGCATCAGAGAATAAGGATCTGCTCACCCAATTCAGGGGGGCTGCTGTTGCCATTGCGTCTGATGAGAAGATCGCACTGCTGGGTGCTATCCAGTCTTTATTTGAAGGTTCAATGTACACCTTTGTGTTCCTCTGGACACCTGCTCTTAGCCCAAATAATGAGGATATTCCCCATGGCTTTATCTTTGCAACATTCATGTTGGCTTCAATGCTCGGAAGTTCCCTTGCATCTAGGTTGATGGCTCGAAATTCACCAAAAGTTGAGAGCTACATGCAGATTGTTTTCGTTGTCTCGTCTGCCTCTCTTGTACTTCCGATTGTGACCAGTTTCTTGGTAGCTCCAGCAGATGTGAAAGGTGGAAGCATCTCCTTCGCAGGCTGTATTCAGTTGCTTGGCTTCTGTGCTTTTGAGGCCTGTGTTGGTATATTTTGGCCTTCCATAATGAAGATGAGATCCCAGTACATTCCTGAGGAGGCTAGAAGTACCATCATGAACTTCTTCCGCATTCCTCTCAACATCTTCGTGTGTGTGGTGCTTTATAATGTGGATGCTTTCCCTATCACTGTGATGTTTGGCATGTGCGCCATTTTCCTCTTTGTGGCATCGATTTTACAGAGGCGGCTTCAGGCAATTGCTGAGAAGCCAAATTCAGTTTCTGTTAGTGTTGAGAAGCCTGTAATGATGAATAATCCAACTATGCTTCTTCCTCACATCGTAAAAGAGTGGAGACTGGGGATTGAGCGAAAAGAATACCGAGGCAGATCCGTTAAACATCTAAGCGATGTAGAGAAGGACGGACCACAGTTGACTGTCGGTGAGTCTTCGAATCCTACATATAGCTGTAGAAATTGCCGCAATCCGCTCGCTTCCGGAGCCCATCTCCTTTCTAAATCCTACTGGGCAAAATCAGGGAAAGCATTCCTATTCTCAGAAGCAAAGAACATAGTGGAGGGACCAAAAGAGCAAAATCAGTTGATTACAGGCATTTTCAAAATTGCAGAAATACATTGCAATATATGTGGACAAGTTCTGGGTTGGAAGTATCTCAAAGCTTATGACCTTAAACAAAAGTACAAGGAAGGAAAATTCATCATTGAAACCGCTAAGATTTCAAAGGAATACAACTAA 1815 43.97 MEIFYFLVFGALSLVVATLELTKTNKDRINTPSAFNAFKNNYLLVYSLMMAGDWLQGPYVYYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKVLMLGRVLGGIATSLLFSAFESWLVAEHNKARFHRGFEQQWLSITFSKAIFLGNGLVAILAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDASENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSLASRLMARNSPKVESYMQIVFVVSSASLVLPIVTSFLVAPADVKGGSISFAGCIQLLGFCAFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCAIFLFVASILQRRLQAIAEKPNSVSVSVEKPVMMNNPTMLLPHIVKEWRLGIERKEYRGRSVKHLSDVEKDGPQLTVGESSNPTYSCRNCRNPLASGAHLLSKSYWAKSGKAFLFSEAKNIVEGPKEQNQLITGIFKIAEIHCNICGQVLGWKYLKAYDLKQKYKEGKFIIETAKISKEYN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44356 51266 + Lsi09G000060.1 Lsi09g00006 669619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00006 604 SUPERFAMILY MFS general substrate transporter 43 437 IPR036259 -
Lsi09g00006 604 PANTHER MOLYBDATE-ANION TRANSPORTER 1 450 - -
Lsi09g00006 604 CDD MFS_MFSD5_like 35 435 - -
Lsi09g00006 604 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 508 600 IPR004910 -
Lsi09g00006 604 Pfam Sugar-tranasporters, 12 TM 4 362 IPR008509 GO:0015098|GO:0015689|GO:0016021
Lsi09g00006 604 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 1 450 IPR008509 GO:0015098|GO:0015689|GO:0016021
Lsi09g00006 604 ProSiteProfiles Yippee domain profile. 506 603 IPR034751 -
Lsi09g00006 604 Gene3D MFS general substrate transporter like domains 42 435 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00006 K24175 MFSD5; MFS transporter, MFS domain-containing protein family, molybdate-anion transporter - csv:101204554 839.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00006 Lsi-Chr9:44356 Lsi09g00007 Lsi-Chr9:53933 4.80E-31 tandem
Lsi01g00102 Lsi-Chr1:1075895 Lsi09g00006 Lsi-Chr9:44356 0 transposed
Lsi01g00919 Lsi-Chr1:7426550 Lsi09g00006 Lsi-Chr9:44356 1.18E-15 transposed
Lsi05g02148 Lsi-Chr5:28245389 Lsi09g00006 Lsi-Chr9:44356 1.31E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g998 Blo06g01055 Blo15g00079 . Bda07g01948 . Bpe07g01025 . Bma14g02020 . . . Cma15g01012 Car02g00941 Car15g00946 . Cpe05g00586 . . . . . . . . Cla01g00026 Cam01g0025 Cec01g0023 Cco01g0026 Clacu01g0026 Cmu01g0025 Cre09g2482 Cone1ag1005 Cone5ag0713 Cone14ag0001 Cone15ag0002 . . . . . Blo09g00012 Bda06g00794 Bda15g00793 . Bpe12g00341 . Bma12g01220 . Cmo02g01168 . . . . . . Cpe13g00324 Bhi12g00679 . . . Hepe06g0814 . . . . . . . . . Lsi09g00006 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00006 Lsi_Chr09 FPKM 14.676254 14.533629 15.158444 14.281984 15.90797 16.161095 19.15494 16.211723 14.583486 19.089483