Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00007 ATGGCTGAACTGTTGGGGCCTCGTTTGTACAGCTGCTGTAATTGTAGAAACCATGTTGCCTTCCACGATGATATAATTTCTAAAGCTTTTCAGGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCCATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTTGGGTGGAAATATGAGAGGGCATATGAGGCATCGCAGAAGTACAAAGAAGGGAAGTTCATTCTTGAAAAGTCAAAAATCGTTAGGGACAACTGGTAG 321 46.11 MAELLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 53933 54591 + Lsi09G000070.1 Lsi09g00007 669620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00007 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Lsi09g00007 106 PANTHER PROTEIN YIPPEE-LIKE 1 106 - -
Lsi09g00007 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 101 IPR004910 -
Lsi09g00007 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00007 - - - csv:101205521 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01534 Lsi-Chr1:13453458 Lsi09g00007 Lsi-Chr9:53933 4.16E-38 dispersed
Lsi03g00314 Lsi-Chr3:3793941 Lsi09g00007 Lsi-Chr9:53933 2.89E-38 dispersed
Lsi04g00971 Lsi-Chr4:10237442 Lsi09g00007 Lsi-Chr9:53933 2.12E-09 dispersed
Lsi04g02051 Lsi-Chr4:27610731 Lsi09g00007 Lsi-Chr9:53933 2.07E-22 dispersed
Lsi05g02148 Lsi-Chr5:28245389 Lsi09g00007 Lsi-Chr9:53933 9.42E-38 dispersed
Lsi09g00006 Lsi-Chr9:44356 Lsi09g00007 Lsi-Chr9:53933 4.80E-31 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1005 . . . . . . . Bma14g02018 . . Cma02g01137 . Car02g00940 Car15g00947 . Cpe05g00587 . . . . . . . . . . . . . . . . Cone5ag0709 . . . Csa05g00033 Chy09g01451 . . . . Bda15g00792 . . Bma08g00395 . . Cmo02g01166 . . . . . . Cpe13g00323 Bhi12g00677 . . . Hepe06g0813 . . . . . . . . . Lsi09g00007 . . Cme09g02000
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002328 1 4 0 1 1 2 2 1 2 2 1 1 1 2 2 1 1 1 3 2 2 3 2 1 3 2 2 3 8 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00007 Lsi_Chr09 FPKM 10.842794 12.120721 13.477747 13.956538 17.706196 17.411079 19.470377 19.469402 17.603947 20.225534