Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00009 ATGGGAATTGATTATTGTGGATTTGGTTATCAGTTTGCAGGTGGTGGAGTGGTTGTTAAACAAATGGAAGGAGGAGGATCATCAAATTCTTCAAAGCCTAATAATAATAATAATAATAATAATAATAATAATGGTAATTTGTTGGAGAGAAAAGCAAGGCCTCAAAAGGAGCAAGCTTTGAACTGTCCAAGGTGTAATTCGACGAACACAAAATTCTGTTATTACAACAATTACAGCCTGTCTCAACCAAGGTATTTTTGCAAAGCTTGTCGGAGGTATTGGACTGAAGGTGGTTCTTTAAGGAATGTTCCAGTGGGTGGCGGTTCAAGGAAGAACAAAAGGTCTTCACTTTCATCATCATCATCATCAGCTGATAAGAAGATCAACGGCTCTGATCAAAACCCTAAAATGATCCATCATGCTCATCAAGATCTCAATCTTGCAATCTTCCCTCCAAACAACAACAACAATACTTCTATTCCTTCTTCTACTTCCACTTCTTCTTCTCACCTTTTGGGTTCTTTCATGACGGTGGCACCGGCGGCCGGAGTGTTCAATGGCGGCGGCGGGTTTGGATTGAATGAGCTGAAGCCACCAAGTTTAAGTTTTTCTTTGGAAGGGTTTGAGAATGGAGGAGGATATGGGGGAGATCATAATCATAATCATCACCATCACCATCACCATCATCATCATCATCAAGATCAGACGGCTGTGATGTTTCCCATGGAAGAATTGAAGCAAAGTAATGGGAGAGATGAATTTGCGGAGAATAGAGGAGGGCATGGAGGGGATAATAATAATAATAATTCAGGTGGTGGATTTTGGAATGGGATGTTGGGAGGTGGATCATGGTAA 855 40.82 MGIDYCGFGYQFAGGGVVVKQMEGGGSSNSSKPNNNNNNNNNNNGNLLERKARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSSSSADKKINGSDQNPKMIHHAHQDLNLAIFPPNNNNNTSIPSSTSTSSSHLLGSFMTVAPAAGVFNGGGGFGLNELKPPSLSFSLEGFENGGGYGGDHNHNHHHHHHHHHHHQDQTAVMFPMEELKQSNGRDEFAENRGGHGGDNNNNNSGGGFWNGMLGGGSW 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70140 70994 - Lsi09G000090.1 Lsi09g00009 669622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00009 284 MobiDBLite consensus disorder prediction 101 136 - -
Lsi09g00009 284 MobiDBLite consensus disorder prediction 23 47 - -
Lsi09g00009 284 MobiDBLite consensus disorder prediction 148 169 - -
Lsi09g00009 284 Pfam Dof domain, zinc finger 58 114 IPR003851 GO:0003677|GO:0006355
Lsi09g00009 284 MobiDBLite consensus disorder prediction 214 234 - -
Lsi09g00009 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 280 IPR045174 GO:0003700|GO:0006355
Lsi09g00009 284 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Lsi09g00009 284 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Lsi09g00009 284 MobiDBLite consensus disorder prediction 219 233 - -
Lsi09g00009 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 39 280 - -
Lsi09g00009 284 MobiDBLite consensus disorder prediction 249 284 - -
Lsi09g00009 284 MobiDBLite consensus disorder prediction 109 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00009 - - - cmos:111430405 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01450 Lsi-Chr2:20161972 Lsi09g00009 Lsi-Chr9:70140 1.27E-38 dispersed
Lsi09g00009 Lsi-Chr9:70140 Lsi01g00304 Lsi-Chr1:2722870 1.26E-36 dispersed
Lsi08g00529 Lsi-Chr8:13243607 Lsi09g00009 Lsi-Chr9:70140 7.37E-34 transposed
Lsi09g00151 Lsi-Chr9:1530361 Lsi09g00009 Lsi-Chr9:70140 4.50E-45 transposed
Lsi05g00119 Lsi-Chr5:1885458 Lsi09g00009 Lsi-Chr9:70140 1.05E-37 wgd
Lsi05g02138 Lsi-Chr5:28199110 Lsi09g00009 Lsi-Chr9:70140 2.52E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1009 . . Bda05g00131 Bda07g01944 Bpe03g00228 . Bma10g01308 Bma14g02017 Cmo16g00040 . . Cma15g01014 . Car15g00949 . . Cpe14g00027 Bhi01g01514 . . . Hepe07g0043 Mch10g0043 . Cla01g00029 Cam01g0028 Cec01g0026 Cco01g0028 Clacu01g0028 Cmu01g0027 Cre09g2479 . Cone5ag0708 . . . . . Cme06g01166 Blo07g00326 Blo09g00015 . . . . . . . . Cmo15g01079 Cma16g00034 . Car16g00033 . . Cpe13g00322 Bhi12g00672 . . . . . . Cla05g00985 Cam05g1076 Cec05g1083 Cco05g1076 Clacu05g1070 Cmu05g1021 Cre05g1095 Lsi09g00009 Csa03g01968 Chy06g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25847 PF02701 zf-Dof 9.10E-34 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00009 Lsi_Chr09 FPKM 29.955555 34.822803 25.574612 28.012119 29.13855 28.051514 33.248718 31.453289 35.32864 34.79353