Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00010 ATGATGCACAAGCGCAGAACTCTTGCTCCCAAACCCTCTTCCCCCCATCATTTTGCACCAGATGACGACGATTACGACGACATTTCGTGCCAGAACTGCGGCTCCGGCGACTCTCCGGCCGAGCTTCTTCTCTGCGACAAATGTGATCGAGGGTATCATCTCTTTTGTCTTACCCCCATCCTCGCTTCCGTCCCCAAGGGATCCTGGTTCTGCCCTACTTGCTCCAGCCACAAGAATCTCAAATCTTTCCCTCTTGTGCAAACTAAGATTGTTGATTTTTTCCGCATTCAAAGACCTGCGGACTCTCAAACGGACTTAAGCCTAGAAAACCGAAAGAAACGAAGACGGGCTGGTAGCTTAGTACTTAGTAAAAAGAGAAGGAAGCTCTTGCCATTTAATCCGACAGCAGATCCTGCGAGACGCTTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACAGGTACAGATTTCAGCAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCAGCAAACTGCTCATCTCTGGAGCACGGTGGAATGCAGAAACGCACAAACCAAATACTACTGTCGGATAACAATGAATCACTAAGACCATTTTCCGCATTTGTGCTTAGTGAGACAGTGGTGAGATGGATAAATGATTGGAGTTTTTCAACGCCAAAATGTATTAAGTCACTGGGTGCTGGAGGCTCTTTGTCTGATCTCTTCTGTGATGCTGAAGTTCTTCCAAAAGAGGACGTTGAAACCTTAAACTTGTGCAGAAGTATGATGGAGAGAGGGGAATGGCCCCCACTTATGGTTGTTTTTGATCCTCGAGAAGGGTTCACTGTGGAAGCAGATAGGTTTATAAAGGACTTGACCATAATTACGGAATATACTGGGGATGTTGATTACTTGAGGAACCGTGAACATGATGATGGGGATAGTATGATGACATTACTGTCTGCGGCTAACCCATCTAAAAGCCTCGTCATTTGTCCTGACAAACGTAGTAACATTGCCCGTTTTATAAATGGAATCAACAACCATACACCGGATGGTAGGAAAAAGCAAAACCTTAAGTGCGTAAGGTTCAATGTAAATGGTGAATGTAGAGTTTTACTGATTGCAAACAGAGATATATCTAAGGGAGAGAGATTGTATTATGACTACAATGGATACGAGCATGAATACCCCACTGAGCACTTTGTGTAA 1206 44.94 MMHKRRTLAPKPSSPHHFAPDDDDYDDISCQNCGSGDSPAELLLCDKCDRGYHLFCLTPILASVPKGSWFCPTCSSHKNLKSFPLVQTKIVDFFRIQRPADSQTDLSLENRKKRRRAGSLVLSKKRRKLLPFNPTADPARRLEQMASLATALTATGTDFSNELTYMRGMAPRSANCSSLEHGGMQKRTNQILLSDNNESLRPFSAFVLSETVVRWINDWSFSTPKCIKSLGAGGSLSDLFCDAEVLPKEDVETLNLCRSMMERGEWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREHDDGDSMMTLLSAANPSKSLVICPDKRSNIARFINGINNHTPDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 80825 83381 + Lsi09G000100.1 Lsi09g00010 669623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00010 401 PANTHER HISTONE ACETYLTRANSFERASE 245 398 - -
Lsi09g00010 401 CDD PHD_BAZ2A_like 29 74 - -
Lsi09g00010 401 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 245 398 - -
Lsi09g00010 401 SUPERFAMILY SET domain 259 389 IPR046341 -
Lsi09g00010 401 SMART PHD_3 29 75 IPR001965 -
Lsi09g00010 401 SUPERFAMILY FYVE/PHD zinc finger 21 81 IPR011011 -
Lsi09g00010 401 PANTHER HISTONE ACETYLTRANSFERASE 3 183 - -
Lsi09g00010 401 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Lsi09g00010 401 CDD SET_ATXR5_6-like 264 401 - -
Lsi09g00010 401 Gene3D SET domain 114 401 IPR046341 -
Lsi09g00010 401 Pfam PHD-finger 30 76 IPR019787 -
Lsi09g00010 401 ProSiteProfiles SET domain profile. 267 389 IPR001214 GO:0005515
Lsi09g00010 401 Pfam SET domain 314 389 IPR001214 GO:0005515
Lsi09g00010 401 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Lsi09g00010 401 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 183 - -
Lsi09g00010 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 90 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00010 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - pop:7464531 485.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00010 Lsi-Chr9:80825 Lsi10g00715 Lsi-Chr10:10008638 2.11E-139 dispersed
Lsi09g00010 Lsi-Chr9:80825 Lsi03g02089 Lsi-Chr3:32162737 1.82E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25848 PF00856 SET 9.80E-05 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00010 Lsi_Chr09 FPKM 43.861496 49.127388 40.769562 42.499916 44.224377 39.947525 44.290848 42.964596 39.149441 36.448895