Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00011 ATGCCGCGAATAATGGGTAGCGTTAGCGGAGATGAAGAATGCCCATTTTTTGATGCCCAAGAGATCAATGCTCCCTTGATATCTGAACCCAATTGCGATGGTATTGAGGCGGCCTTTGATTCTCATCCCAGATTCAACAATTGGGTCGATGGGAGTTTGGTTTATGATGTATGGAATCGAAGCCCCATGAGTGTTAACGAACGTCGGAGGAAGTTTTTGAAATGGATGGGGATGGGATTAGATCGAACTCCTCCTCCATATCATGCCAATTCTCTGTCTCTCTGCAGTGATTGGAGAGAAGGGGATGGAGGAAGAATCAGGGACAATTCTGGGGTTGAATCCTCTGATTTTGAAGATGTGTTTGTCTCGGGAAGATCTTCCATCTCATGTTGGTCTACTGATGATATTGAACTTTCAGAGATGGCTTCATCCAATACCGTTCTGTACAGGGATGATGGGATTAAGGGAGAATGTGGCAGGAAAAATGGGGATCTAAAACCCTCTGTTCGGTTTGCAATGCCTGAACAGCTTGAGGGGACTTCTAGTTCCTCACCATCTTTTCAACAAATGATGGAGATGGAAGGTGAGAGAGCAAACATCCCATTGCGTTCAGCACGAAGAGTCAACAAACGTTGGCTTAAGAAATTGCGATCGGCAGCCTGCATTTTTGAGAAACATGGTAAGTCAACAAGATTGGTAGTTGATGATGATTCAGCTGCAGGGTCGAGAGTTCGGAGGATGAAAGTTCGCCATTGCAAGAAGCATTTGAAGGAACTGTCAGCCCTGTATATGGGACAAGATATCAAGGCACATGAAGGTGCTATATTGACAATGAAGTTTAGTCCTAATGGACAGTATCTTGCTACTGGTGGTGATGATGGGATTGTTAAATTGTGGCAAGTGATTGAAGATGAGAGATCTAATGAATCTGACATCCCCGAAATTGATCCATCCTGCATATACTTCACGGTGAATCGTCTCTCCGAGTTGAAACCCCTGCTTGTGGAGAAAGAGAAGATGACCAACTCAATGACCTTGAGGAAAACATCGGAATCAGCTTGTATAATTTTTCCACCTAAAGTCTTCAGGATATTGGAGAGACCATTGCACGAGTTCCATGGACATTCTGGTGATATTTTGGATCTCTCTTGGTCAAAAAACAATTATATTCTGTCATCATCGATTGATAAAACTGTCCGACTTTGGCGATTGGGATCTGATGATTGTCTCAGAGTTTTTTCACATAGTAATTATGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATTCGCATTTGGGGAATTCCTTCTTGTCAAGTTGTTGACTGGATTGACATTAGGGAAATTGTCACTGCAGTGTCTTATCATCCTGATGGACAGGGAGGAATTGTTGGCTCCATAAATGGTACTTGCCGCTTCTTTAAAGTAATAGGTATGCTTATCTTCTGTCCTTGGTTTTGCTCCCAGTCTATTGTGATAATGAACTATGGGTCTATTAGCCTGCCGAATCTTTATCTTTGGTATGAAGTTGCTATTGCCTCGGAGGATGACTTGCAAGAGGAGAGTATTCATCATAAAAGTGACAACGACGTGGTTTTTGCTTTGAAAGATTGTCTAAACCAATCACTTGATTTGTTTTGGTTAGGTGATAATAACTTGGAATTAGATGGCGAAATATGTTTGTCCAGTAAGAAGAAGTCACCCAGTAAAAAGATAACGGGGTTTCAGTATTCTGCAGAAGATTCAAGCAGAATAATGGTGAGCTCTGCTGATTCTCGAATCCGGATAATTCAAGGGCTTCATGTGATTCAGAAGTACAAGGGGCCTTGTAATACGGGAAACCAGATGTCTGCATCATTTACCTCAGATGGGAAACATATTATCTCGGCTAGTGGGGATTCTAATGTATATGTATGGAACTGCAGTTATAAGAACGAGGCTGTTCTTTCCCCAGTGAAAAAGATTAAGTCGTATGAATATTTCTCCCCCAATGCTTCCATTGCAGTACCATGGTGTGGTTTGAGATGTAACACAGAGGTTGATGGAAGACATTTTGCTGGCATGCAAAGGAATTCGCCTGAAACTTTCCCACTTCCATCACCTGCGTTTTTCTCTTTGAGCCAGGAGTTATTAGAATCCTTCCCCAAGGGATCCGCAACTTGGCCCGAGGAGAAGCTCCCAACTTCTAGCCTACTAGCAAAACCATCTATGATGCATAAATCTCGGTATAAGTTTCTGAAATTGTCTTGCCAAAATACATCAAGTTCTCATGCTTGGGGTCTGGTCATCGTGACTGCAGGATGGGATGGACGAATCAGGTCGTTTCACAATTACGGGTTGCCTGTACATGGTCAGTTTATGGAAATGACAATTGATGGTAGAAGCTTCTCTGTAGAGGAAACGACTTCGAATCAGCTAGTGGCCAAGGTTACTGCAGGGCTTGGAGGACCTCTTACCTCTTGCCTTTTCTGCTCTAACATGGTCAAGGAAATCAAGATTGGTGGTCTGAATTAA 2547 42.44 MPRIMGSVSGDEECPFFDAQEINAPLISEPNCDGIEAAFDSHPRFNNWVDGSLVYDVWNRSPMSVNERRRKFLKWMGMGLDRTPPPYHANSLSLCSDWREGDGGRIRDNSGVESSDFEDVFVSGRSSISCWSTDDIELSEMASSNTVLYRDDGIKGECGRKNGDLKPSVRFAMPEQLEGTSSSSPSFQQMMEMEGERANIPLRSARRVNKRWLKKLRSAACIFEKHGKSTRLVVDDDSAAGSRVRRMKVRHCKKHLKELSALYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTVNRLSELKPLLVEKEKMTNSMTLRKTSESACIIFPPKVFRILERPLHEFHGHSGDILDLSWSKNNYILSSSIDKTVRLWRLGSDDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPSCQVVDWIDIREIVTAVSYHPDGQGGIVGSINGTCRFFKVIGMLIFCPWFCSQSIVIMNYGSISLPNLYLWYEVAIASEDDLQEESIHHKSDNDVVFALKDCLNQSLDLFWLGDNNLELDGEICLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIQGLHVIQKYKGPCNTGNQMSASFTSDGKHIISASGDSNVYVWNCSYKNEAVLSPVKKIKSYEYFSPNASIAVPWCGLRCNTEVDGRHFAGMQRNSPETFPLPSPAFFSLSQELLESFPKGSATWPEEKLPTSSLLAKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLPVHGQFMEMTIDGRSFSVEETTSNQLVAKVTAGLGGPLTSCLFCSNMVKEIKIGGLN 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 100654 106228 + Lsi09G000110.1 Lsi09g00011 669624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 444 IPR001680 GO:0005515
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Lsi09g00011 848 Gene3D - 562 679 IPR015943 GO:0005515
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 444 - -
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 404 - -
Lsi09g00011 848 Gene3D - 363 491 IPR015943 GO:0005515
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Lsi09g00011 848 Pfam WD domain, G-beta repeat 268 299 IPR001680 GO:0005515
Lsi09g00011 848 Pfam WD domain, G-beta repeat 408 444 IPR001680 GO:0005515
Lsi09g00011 848 Pfam WD domain, G-beta repeat 367 402 IPR001680 GO:0005515
Lsi09g00011 848 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 10 488 - -
Lsi09g00011 848 PANTHER WD REPEAT DOMAIN 44 557 794 IPR040324 -
Lsi09g00011 848 PANTHER WD REPEAT DOMAIN 44 10 488 IPR040324 -
Lsi09g00011 848 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 557 794 - -
Lsi09g00011 848 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Lsi09g00011 848 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Lsi09g00011 848 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 651 IPR001680 GO:0005515
Lsi09g00011 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 412 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 448 486 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 261 300 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 610 651 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 406 445 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 569 609 IPR001680 GO:0005515
Lsi09g00011 848 SMART WD40_4 365 403 IPR001680 GO:0005515
Lsi09g00011 848 SUPERFAMILY WD40 repeat-like 267 785 IPR036322 GO:0005515
Lsi09g00011 848 Gene3D - 203 310 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00011 - - - csv:101206156 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00011 Lsi-Chr9:100654 Lsi09g00152 Lsi-Chr9:1590257 6.00E-119 dispersed
Lsi09g00011 Lsi-Chr9:100654 Lsi02g02285 Lsi-Chr2:29422484 1.81E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00011 Lsi_Chr09 FPKM 13.992559 14.930731 4.616998 5.05946 10.39704 9.91293 10.251943 2.061211 2.013688 2.187773